Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00586 and CCNA_00587 are separated by 187 nucleotides CCNA_00587 and CCNA_00588 are separated by 173 nucleotides CCNA_00588 and CCNA_00589 are separated by 7 nucleotides
CCNA_00586: CCNA_00586 - LytR/AlgR-family transcriptional regulator, at 614,415 to 615,746
_00586
CCNA_00587: CCNA_00587 - alpha/beta hydrolase family protein, at 615,934 to 617,430
_00587
CCNA_00588: CCNA_00588 - SapA domain protein, at 617,604 to 617,843
_00588
CCNA_00589: CCNA_00589 - hypothetical protein, at 617,851 to 618,567
_00589
Position (kb) 615
616
617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 614.941 kb on - strand, within CCNA_00586 at 614.943 kb on + strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.985 kb on + strand, within CCNA_00586 at 615.016 kb on + strand, within CCNA_00586 at 615.069 kb on + strand, within CCNA_00586 at 615.071 kb on - strand, within CCNA_00586 at 615.077 kb on - strand, within CCNA_00586 at 615.079 kb on - strand, within CCNA_00586 at 615.082 kb on + strand, within CCNA_00586 at 615.086 kb on + strand, within CCNA_00586 at 615.189 kb on + strand, within CCNA_00586 at 615.217 kb on + strand, within CCNA_00586 at 615.222 kb on - strand, within CCNA_00586 at 615.236 kb on + strand, within CCNA_00586 at 615.244 kb on + strand, within CCNA_00586 at 615.260 kb on - strand, within CCNA_00586 at 615.284 kb on + strand, within CCNA_00586 at 615.293 kb on - strand, within CCNA_00586 at 615.340 kb on + strand, within CCNA_00586 at 615.398 kb on + strand, within CCNA_00586 at 615.402 kb on + strand, within CCNA_00586 at 615.406 kb on - strand, within CCNA_00586 at 615.406 kb on - strand, within CCNA_00586 at 615.411 kb on - strand, within CCNA_00586 at 615.424 kb on + strand, within CCNA_00586 at 615.429 kb on + strand, within CCNA_00586 at 615.444 kb on + strand, within CCNA_00586 at 615.444 kb on + strand, within CCNA_00586 at 615.452 kb on - strand, within CCNA_00586 at 615.471 kb on + strand, within CCNA_00586 at 615.599 kb on + strand, within CCNA_00586 at 615.599 kb on - strand, within CCNA_00586 at 615.604 kb on + strand, within CCNA_00586 at 615.619 kb on - strand at 615.628 kb on - strand at 615.643 kb on + strand at 615.643 kb on - strand at 615.665 kb on - strand at 615.665 kb on - strand at 615.684 kb on + strand at 615.692 kb on + strand at 615.692 kb on - strand at 615.699 kb on + strand at 615.710 kb on + strand at 615.717 kb on + strand at 615.726 kb on - strand at 615.743 kb on + strand at 615.746 kb on - strand at 615.748 kb on + strand at 615.751 kb on - strand at 615.751 kb on - strand at 615.804 kb on + strand at 615.804 kb on + strand at 615.804 kb on + strand at 615.804 kb on + strand at 615.804 kb on + strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.840 kb on + strand at 615.856 kb on + strand at 615.917 kb on + strand at 615.925 kb on - strand at 615.943 kb on + strand at 615.950 kb on - strand at 615.954 kb on + strand at 615.954 kb on + strand at 615.955 kb on + strand at 615.962 kb on - strand at 615.962 kb on - strand at 615.962 kb on - strand at 615.962 kb on - strand at 615.975 kb on - strand at 615.975 kb on - strand at 615.978 kb on + strand at 615.980 kb on - strand at 616.038 kb on - strand at 616.038 kb on - strand at 616.038 kb on - strand at 616.045 kb on + strand at 616.057 kb on + strand at 616.070 kb on + strand at 616.078 kb on - strand at 616.080 kb on + strand at 616.080 kb on + strand at 616.088 kb on - strand, within CCNA_00587 at 616.095 kb on + strand, within CCNA_00587 at 616.103 kb on - strand, within CCNA_00587 at 616.113 kb on - strand, within CCNA_00587 at 616.158 kb on - strand, within CCNA_00587 at 616.193 kb on + strand, within CCNA_00587 at 616.193 kb on + strand, within CCNA_00587 at 616.196 kb on - strand, within CCNA_00587 at 616.206 kb on - strand, within CCNA_00587 at 616.223 kb on + strand, within CCNA_00587 at 616.231 kb on - strand, within CCNA_00587 at 616.307 kb on + strand, within CCNA_00587 at 616.313 kb on - strand, within CCNA_00587 at 616.315 kb on - strand, within CCNA_00587 at 616.315 kb on - strand, within CCNA_00587 at 616.333 kb on + strand, within CCNA_00587 at 616.350 kb on + strand, within CCNA_00587 at 616.355 kb on + strand, within CCNA_00587 at 616.363 kb on - strand, within CCNA_00587 at 616.363 kb on - strand, within CCNA_00587 at 616.368 kb on - strand, within CCNA_00587 at 616.398 kb on - strand, within CCNA_00587 at 616.398 kb on - strand, within CCNA_00587 at 616.398 kb on - strand, within CCNA_00587 at 616.422 kb on + strand, within CCNA_00587 at 616.426 kb on + strand, within CCNA_00587 at 616.461 kb on + strand, within CCNA_00587 at 616.469 kb on - strand, within CCNA_00587 at 616.476 kb on + strand, within CCNA_00587 at 616.500 kb on - strand, within CCNA_00587 at 616.511 kb on - strand, within CCNA_00587 at 616.586 kb on + strand, within CCNA_00587 at 616.587 kb on - strand, within CCNA_00587 at 616.599 kb on - strand, within CCNA_00587 at 616.600 kb on - strand, within CCNA_00587 at 616.603 kb on + strand, within CCNA_00587 at 616.608 kb on + strand at 616.613 kb on + strand, within CCNA_00587 at 616.614 kb on + strand, within CCNA_00587 at 616.619 kb on + strand, within CCNA_00587 at 616.636 kb on - strand, within CCNA_00587 at 616.636 kb on - strand, within CCNA_00587 at 616.648 kb on + strand, within CCNA_00587 at 616.653 kb on + strand, within CCNA_00587 at 616.658 kb on + strand, within CCNA_00587 at 616.666 kb on - strand, within CCNA_00587 at 616.688 kb on - strand, within CCNA_00587 at 616.763 kb on + strand, within CCNA_00587 at 616.763 kb on + strand, within CCNA_00587 at 616.771 kb on - strand, within CCNA_00587 at 616.788 kb on - strand, within CCNA_00587 at 616.803 kb on + strand, within CCNA_00587 at 616.805 kb on - strand, within CCNA_00587 at 616.829 kb on + strand, within CCNA_00587 at 616.837 kb on - strand, within CCNA_00587 at 616.837 kb on - strand, within CCNA_00587 at 616.842 kb on - strand, within CCNA_00587 at 616.842 kb on - strand, within CCNA_00587 at 616.849 kb on + strand, within CCNA_00587 at 616.884 kb on + strand, within CCNA_00587 at 616.884 kb on + strand, within CCNA_00587 at 616.885 kb on - strand, within CCNA_00587 at 616.892 kb on + strand, within CCNA_00587 at 616.973 kb on - strand, within CCNA_00587 at 617.025 kb on + strand, within CCNA_00587 at 617.066 kb on + strand, within CCNA_00587 at 617.074 kb on - strand, within CCNA_00587 at 617.079 kb on - strand, within CCNA_00587 at 617.084 kb on - strand, within CCNA_00587 at 617.101 kb on + strand, within CCNA_00587 at 617.101 kb on + strand, within CCNA_00587 at 617.106 kb on + strand, within CCNA_00587 at 617.144 kb on + strand, within CCNA_00587 at 617.185 kb on + strand, within CCNA_00587 at 617.235 kb on - strand, within CCNA_00587 at 617.264 kb on - strand, within CCNA_00587 at 617.264 kb on - strand, within CCNA_00587 at 617.264 kb on - strand, within CCNA_00587 at 617.282 kb on - strand at 617.333 kb on + strand at 617.341 kb on + strand at 617.341 kb on + strand at 617.341 kb on + strand at 617.341 kb on + strand at 617.342 kb on + strand at 617.349 kb on - strand at 617.349 kb on - strand at 617.380 kb on + strand at 617.420 kb on + strand at 617.423 kb on - strand at 617.442 kb on + strand at 617.465 kb on - strand at 617.493 kb on + strand at 617.499 kb on - strand at 617.501 kb on - strand at 617.501 kb on - strand at 617.509 kb on - strand at 617.514 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.529 kb on - strand at 617.529 kb on - strand at 617.529 kb on - strand at 617.569 kb on + strand at 617.584 kb on - strand at 617.596 kb on - strand at 617.596 kb on - strand at 617.642 kb on - strand, within CCNA_00588 at 617.648 kb on + strand, within CCNA_00588 at 617.727 kb on - strand, within CCNA_00588 at 617.869 kb on - strand at 617.873 kb on + strand at 617.875 kb on - strand at 617.881 kb on - strand at 617.933 kb on - strand, within CCNA_00589 at 617.935 kb on + strand, within CCNA_00589 at 617.963 kb on - strand, within CCNA_00589 at 617.970 kb on + strand, within CCNA_00589 at 617.989 kb on + strand, within CCNA_00589 at 617.992 kb on - strand, within CCNA_00589 at 617.993 kb on - strand, within CCNA_00589 at 618.002 kb on - strand, within CCNA_00589 at 618.031 kb on + strand, within CCNA_00589 at 618.037 kb on - strand, within CCNA_00589 at 618.039 kb on - strand, within CCNA_00589 at 618.066 kb on + strand, within CCNA_00589 at 618.082 kb on - strand, within CCNA_00589 at 618.117 kb on + strand, within CCNA_00589 at 618.117 kb on + strand, within CCNA_00589 at 618.125 kb on - strand, within CCNA_00589 at 618.136 kb on + strand, within CCNA_00589 at 618.157 kb on + strand, within CCNA_00589 at 618.160 kb on + strand, within CCNA_00589 at 618.172 kb on - strand, within CCNA_00589 at 618.205 kb on - strand, within CCNA_00589 at 618.218 kb on + strand, within CCNA_00589 at 618.223 kb on + strand, within CCNA_00589 at 618.231 kb on - strand, within CCNA_00589 at 618.231 kb on - strand, within CCNA_00589 at 618.247 kb on - strand, within CCNA_00589 at 618.252 kb on - strand, within CCNA_00589 at 618.312 kb on + strand, within CCNA_00589 at 618.378 kb on - strand, within CCNA_00589 at 618.386 kb on - strand, within CCNA_00589 at 618.392 kb on + strand, within CCNA_00589
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 614,941 - CCNA_00586 0.39 -0.4 614,943 + CCNA_00586 0.40 +0.6 614,951 - CCNA_00586 0.40 -1.4 614,951 - CCNA_00586 0.40 -0.8 614,951 - CCNA_00586 0.40 -2.3 614,985 + CCNA_00586 0.43 -1.6 615,016 + CCNA_00586 0.45 +0.9 615,069 + CCNA_00586 0.49 -0.1 615,071 - CCNA_00586 0.49 +0.5 615,077 - CCNA_00586 0.50 +0.2 615,079 - CCNA_00586 0.50 -1.9 615,082 + CCNA_00586 0.50 -0.6 615,086 + CCNA_00586 0.50 +1.2 615,189 + CCNA_00586 0.58 -1.6 615,217 + CCNA_00586 0.60 -1.1 615,222 - CCNA_00586 0.61 +0.6 615,236 + CCNA_00586 0.62 -1.1 615,244 + CCNA_00586 0.62 -1.6 615,260 - CCNA_00586 0.63 -0.8 615,284 + CCNA_00586 0.65 +1.4 615,293 - CCNA_00586 0.66 +0.4 615,340 + CCNA_00586 0.69 -1.9 615,398 + CCNA_00586 0.74 -1.5 615,402 + CCNA_00586 0.74 -0.0 615,406 - CCNA_00586 0.74 -1.4 615,406 - CCNA_00586 0.74 +0.2 615,411 - CCNA_00586 0.75 -1.0 615,424 + CCNA_00586 0.76 -0.0 615,429 + CCNA_00586 0.76 +0.1 615,444 + CCNA_00586 0.77 +1.1 615,444 + CCNA_00586 0.77 +0.1 615,452 - CCNA_00586 0.78 +1.1 615,471 + CCNA_00586 0.79 -0.9 615,599 + CCNA_00586 0.89 +0.9 615,599 - CCNA_00586 0.89 +2.9 615,604 + CCNA_00586 0.89 -0.5 615,619 - +0.7 615,628 - -0.2 615,643 + -1.5 615,643 - -0.3 615,665 - -0.5 615,665 - -0.2 615,684 + +0.9 615,692 + +0.6 615,692 - +1.2 615,699 + +0.1 615,710 + -1.8 615,717 + -0.2 615,726 - -0.0 615,743 + -0.9 615,746 - +0.5 615,748 + -0.5 615,751 - +0.2 615,751 - +1.4 615,804 + -0.8 615,804 + +0.7 615,804 + +1.6 615,804 + -1.4 615,804 + -1.6 615,812 - -0.7 615,812 - +1.3 615,812 - -0.5 615,812 - +0.1 615,840 + -1.3 615,856 + -2.6 615,917 + -1.9 615,925 - -0.4 615,943 + +0.4 615,950 - +0.6 615,954 + +0.4 615,954 + +0.1 615,955 + -1.5 615,962 - -1.7 615,962 - +1.3 615,962 - +1.1 615,962 - -0.6 615,975 - -1.0 615,975 - +1.1 615,978 + -1.4 615,980 - +0.8 616,038 - +1.3 616,038 - +0.1 616,038 - +0.7 616,045 + -1.9 616,057 + -1.4 616,070 + -1.0 616,078 - -0.2 616,080 + -1.0 616,080 + +0.9 616,088 - CCNA_00587 0.10 +0.6 616,095 + CCNA_00587 0.11 +1.6 616,103 - CCNA_00587 0.11 +0.7 616,113 - CCNA_00587 0.12 +0.4 616,158 - CCNA_00587 0.15 -1.1 616,193 + CCNA_00587 0.17 -2.2 616,193 + CCNA_00587 0.17 -0.0 616,196 - CCNA_00587 0.18 -0.6 616,206 - CCNA_00587 0.18 -0.6 616,223 + CCNA_00587 0.19 -1.4 616,231 - CCNA_00587 0.20 -0.8 616,307 + CCNA_00587 0.25 -1.6 616,313 - CCNA_00587 0.25 +0.1 616,315 - CCNA_00587 0.25 -1.4 616,315 - CCNA_00587 0.25 -0.8 616,333 + CCNA_00587 0.27 -0.6 616,350 + CCNA_00587 0.28 -0.2 616,355 + CCNA_00587 0.28 +0.4 616,363 - CCNA_00587 0.29 +1.4 616,363 - CCNA_00587 0.29 +2.0 616,368 - CCNA_00587 0.29 +0.9 616,398 - CCNA_00587 0.31 -1.5 616,398 - CCNA_00587 0.31 -1.2 616,398 - CCNA_00587 0.31 -1.6 616,422 + CCNA_00587 0.33 -0.8 616,426 + CCNA_00587 0.33 +0.0 616,461 + CCNA_00587 0.35 -0.4 616,469 - CCNA_00587 0.36 -1.8 616,476 + CCNA_00587 0.36 -2.6 616,500 - CCNA_00587 0.38 -0.9 616,511 - CCNA_00587 0.39 -0.1 616,586 + CCNA_00587 0.44 -0.0 616,587 - CCNA_00587 0.44 -0.5 616,599 - CCNA_00587 0.44 -1.3 616,600 - CCNA_00587 0.44 -0.6 616,603 + CCNA_00587 0.45 -0.1 616,608 + +2.2 616,613 + CCNA_00587 0.45 -2.4 616,614 + CCNA_00587 0.45 -1.1 616,619 + CCNA_00587 0.46 -2.6 616,636 - CCNA_00587 0.47 -0.1 616,636 - CCNA_00587 0.47 +1.1 616,648 + CCNA_00587 0.48 -1.8 616,653 + CCNA_00587 0.48 -1.3 616,658 + CCNA_00587 0.48 +0.8 616,666 - CCNA_00587 0.49 +0.4 616,688 - CCNA_00587 0.50 -0.6 616,763 + CCNA_00587 0.55 -0.8 616,763 + CCNA_00587 0.55 -1.1 616,771 - CCNA_00587 0.56 +0.8 616,788 - CCNA_00587 0.57 -1.9 616,803 + CCNA_00587 0.58 +0.1 616,805 - CCNA_00587 0.58 -0.5 616,829 + CCNA_00587 0.60 +0.6 616,837 - CCNA_00587 0.60 +0.1 616,837 - CCNA_00587 0.60 -2.0 616,842 - CCNA_00587 0.61 -0.5 616,842 - CCNA_00587 0.61 +1.5 616,849 + CCNA_00587 0.61 +0.1 616,884 + CCNA_00587 0.63 -0.4 616,884 + CCNA_00587 0.63 -0.2 616,885 - CCNA_00587 0.64 -2.1 616,892 + CCNA_00587 0.64 +0.5 616,973 - CCNA_00587 0.69 -0.1 617,025 + CCNA_00587 0.73 -1.1 617,066 + CCNA_00587 0.76 -0.8 617,074 - CCNA_00587 0.76 -1.4 617,079 - CCNA_00587 0.76 -1.6 617,084 - CCNA_00587 0.77 -0.1 617,101 + CCNA_00587 0.78 -0.2 617,101 + CCNA_00587 0.78 -0.7 617,106 + CCNA_00587 0.78 -1.5 617,144 + CCNA_00587 0.81 -0.1 617,185 + CCNA_00587 0.84 -0.7 617,235 - CCNA_00587 0.87 -1.0 617,264 - CCNA_00587 0.89 -0.0 617,264 - CCNA_00587 0.89 -0.5 617,264 - CCNA_00587 0.89 -1.7 617,282 - -1.3 617,333 + -0.0 617,341 + +1.4 617,341 + -0.9 617,341 + -0.0 617,341 + -0.9 617,342 + -2.9 617,349 - -0.5 617,349 - -2.2 617,380 + -0.5 617,420 + +0.2 617,423 - +0.8 617,442 + +0.5 617,465 - +0.4 617,493 + -1.3 617,499 - -0.4 617,501 - +0.4 617,501 - -1.3 617,509 - -1.5 617,514 + -2.4 617,521 + -1.0 617,521 + -3.4 617,521 + -2.1 617,521 + -1.7 617,521 + -0.6 617,521 + -1.7 617,529 - +1.0 617,529 - -1.3 617,529 - -0.1 617,569 + +0.3 617,584 - -1.0 617,596 - -2.5 617,596 - -2.0 617,642 - CCNA_00588 0.16 -0.3 617,648 + CCNA_00588 0.18 -1.8 617,727 - CCNA_00588 0.51 -0.6 617,869 - +0.5 617,873 + +0.4 617,875 - -1.2 617,881 - -0.9 617,933 - CCNA_00589 0.11 +0.1 617,935 + CCNA_00589 0.12 -2.2 617,963 - CCNA_00589 0.16 -1.4 617,970 + CCNA_00589 0.17 -1.3 617,989 + CCNA_00589 0.19 -0.6 617,992 - CCNA_00589 0.20 +0.3 617,993 - CCNA_00589 0.20 -1.1 618,002 - CCNA_00589 0.21 -0.9 618,031 + CCNA_00589 0.25 +0.4 618,037 - CCNA_00589 0.26 -1.4 618,039 - CCNA_00589 0.26 -0.9 618,066 + CCNA_00589 0.30 +0.1 618,082 - CCNA_00589 0.32 -1.0 618,117 + CCNA_00589 0.37 +0.0 618,117 + CCNA_00589 0.37 -1.6 618,125 - CCNA_00589 0.38 +1.1 618,136 + CCNA_00589 0.40 +0.2 618,157 + CCNA_00589 0.43 -0.5 618,160 + CCNA_00589 0.43 -1.2 618,172 - CCNA_00589 0.45 -0.3 618,205 - CCNA_00589 0.49 -0.0 618,218 + CCNA_00589 0.51 -0.9 618,223 + CCNA_00589 0.52 -0.0 618,231 - CCNA_00589 0.53 -2.0 618,231 - CCNA_00589 0.53 -2.1 618,247 - CCNA_00589 0.55 +0.2 618,252 - CCNA_00589 0.56 -1.1 618,312 + CCNA_00589 0.64 -2.0 618,378 - CCNA_00589 0.74 -0.7 618,386 - CCNA_00589 0.75 -1.8 618,392 + CCNA_00589 0.75 -0.6
Or see this region's nucleotide sequence