Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00482 and CCNA_R0007 are separated by 229 nucleotides CCNA_R0007 and CCNA_00483 are separated by 204 nucleotides CCNA_00483 and CCNA_00484 are separated by 89 nucleotides CCNA_00484 and CCNA_00485 are separated by 98 nucleotides
CCNA_00482: CCNA_00482 - toxin protein module HipA, at 497,584 to 498,855
_00482
CCNA_R0007: CCNA_R0007 - tRNA-Ser, at 499,085 to 499,174
_R0007
CCNA_00483: CCNA_00483 - Zn-dependent hydrolase, glyoxalase II family, at 499,379 to 500,224
_00483
CCNA_00484: CCNA_00484 - hypothetical protein, at 500,314 to 501,015
_00484
CCNA_00485: CCNA_00485 - ribosomal large subunit pseudouridine synthase D, at 501,114 to 502,142
_00485
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 498.389 kb on + strand, within CCNA_00482 at 498.389 kb on + strand, within CCNA_00482 at 498.389 kb on + strand, within CCNA_00482 at 498.389 kb on + strand, within CCNA_00482 at 498.390 kb on + strand, within CCNA_00482 at 498.390 kb on + strand, within CCNA_00482 at 498.394 kb on + strand, within CCNA_00482 at 498.397 kb on - strand at 498.397 kb on - strand, within CCNA_00482 at 498.397 kb on - strand, within CCNA_00482 at 498.498 kb on + strand, within CCNA_00482 at 498.498 kb on + strand, within CCNA_00482 at 498.501 kb on + strand, within CCNA_00482 at 498.507 kb on - strand, within CCNA_00482 at 498.518 kb on - strand, within CCNA_00482 at 498.545 kb on + strand, within CCNA_00482 at 498.550 kb on + strand, within CCNA_00482 at 498.550 kb on + strand, within CCNA_00482 at 498.550 kb on + strand, within CCNA_00482 at 498.558 kb on + strand, within CCNA_00482 at 498.558 kb on - strand, within CCNA_00482 at 498.558 kb on - strand, within CCNA_00482 at 498.567 kb on + strand, within CCNA_00482 at 498.630 kb on + strand, within CCNA_00482 at 498.630 kb on + strand, within CCNA_00482 at 498.630 kb on + strand, within CCNA_00482 at 498.630 kb on + strand, within CCNA_00482 at 498.638 kb on - strand, within CCNA_00482 at 498.660 kb on - strand, within CCNA_00482 at 498.665 kb on + strand, within CCNA_00482 at 498.676 kb on + strand, within CCNA_00482 at 498.676 kb on + strand, within CCNA_00482 at 498.684 kb on - strand, within CCNA_00482 at 498.684 kb on - strand, within CCNA_00482 at 498.732 kb on + strand at 498.732 kb on + strand at 498.732 kb on + strand at 498.732 kb on + strand at 498.740 kb on - strand at 498.767 kb on + strand at 498.774 kb on + strand at 498.781 kb on + strand at 498.816 kb on + strand at 498.816 kb on + strand at 498.816 kb on + strand at 498.816 kb on + strand at 498.824 kb on - strand at 498.824 kb on - strand at 498.824 kb on - strand at 498.824 kb on - strand at 498.849 kb on + strand at 498.850 kb on + strand at 498.850 kb on + strand at 498.864 kb on + strand at 498.864 kb on + strand at 498.864 kb on + strand at 498.869 kb on + strand at 498.869 kb on + strand at 498.869 kb on + strand at 498.877 kb on - strand at 498.877 kb on - strand at 498.913 kb on + strand at 498.943 kb on - strand at 498.980 kb on - strand at 498.980 kb on - strand at 499.005 kb on - strand at 499.022 kb on - strand at 499.385 kb on - strand at 499.385 kb on - strand at 499.385 kb on - strand at 499.480 kb on + strand, within CCNA_00483 at 499.480 kb on + strand, within CCNA_00483 at 499.480 kb on + strand, within CCNA_00483 at 499.480 kb on + strand, within CCNA_00483 at 499.480 kb on + strand, within CCNA_00483 at 499.480 kb on + strand, within CCNA_00483 at 499.488 kb on - strand, within CCNA_00483 at 499.499 kb on + strand, within CCNA_00483 at 499.507 kb on - strand, within CCNA_00483 at 499.509 kb on + strand, within CCNA_00483 at 499.517 kb on - strand, within CCNA_00483 at 499.519 kb on + strand, within CCNA_00483 at 499.522 kb on - strand, within CCNA_00483 at 499.522 kb on - strand, within CCNA_00483 at 499.532 kb on - strand, within CCNA_00483 at 499.675 kb on - strand, within CCNA_00483 at 499.676 kb on - strand, within CCNA_00483 at 499.676 kb on - strand, within CCNA_00483 at 499.676 kb on - strand, within CCNA_00483 at 499.708 kb on + strand, within CCNA_00483 at 499.708 kb on + strand, within CCNA_00483 at 499.717 kb on - strand, within CCNA_00483 at 499.738 kb on + strand, within CCNA_00483 at 499.751 kb on - strand, within CCNA_00483 at 499.777 kb on - strand, within CCNA_00483 at 499.799 kb on - strand, within CCNA_00483 at 499.818 kb on - strand, within CCNA_00483 at 499.824 kb on - strand, within CCNA_00483 at 499.895 kb on - strand, within CCNA_00483 at 499.989 kb on + strand, within CCNA_00483 at 499.989 kb on + strand, within CCNA_00483 at 499.997 kb on - strand, within CCNA_00483 at 499.997 kb on - strand, within CCNA_00483 at 500.002 kb on - strand, within CCNA_00483 at 500.032 kb on - strand, within CCNA_00483 at 500.035 kb on + strand, within CCNA_00483 at 500.043 kb on - strand, within CCNA_00483 at 500.092 kb on - strand, within CCNA_00483 at 500.140 kb on + strand at 500.216 kb on - strand at 500.228 kb on + strand at 500.270 kb on + strand at 500.343 kb on + strand at 500.363 kb on + strand at 500.363 kb on + strand at 500.364 kb on + strand at 500.371 kb on - strand at 500.374 kb on + strand at 500.434 kb on + strand, within CCNA_00484 at 500.441 kb on + strand at 500.455 kb on + strand, within CCNA_00484 at 500.503 kb on + strand, within CCNA_00484 at 500.521 kb on + strand, within CCNA_00484 at 500.521 kb on + strand, within CCNA_00484 at 500.529 kb on - strand, within CCNA_00484 at 500.553 kb on - strand, within CCNA_00484 at 500.614 kb on + strand, within CCNA_00484 at 500.716 kb on + strand, within CCNA_00484 at 500.724 kb on - strand, within CCNA_00484 at 500.754 kb on - strand, within CCNA_00484 at 500.777 kb on + strand, within CCNA_00484 at 500.825 kb on - strand, within CCNA_00484 at 500.825 kb on - strand, within CCNA_00484 at 500.849 kb on + strand, within CCNA_00484 at 500.856 kb on - strand, within CCNA_00484 at 500.902 kb on + strand, within CCNA_00484 at 500.902 kb on + strand, within CCNA_00484 at 500.910 kb on - strand, within CCNA_00484 at 500.910 kb on - strand, within CCNA_00484 at 500.939 kb on - strand, within CCNA_00484 at 500.979 kb on - strand at 501.002 kb on + strand at 501.010 kb on - strand at 501.046 kb on - strand at 501.050 kb on + strand at 501.054 kb on - strand at 501.059 kb on - strand at 501.073 kb on - strand at 501.096 kb on + strand at 501.103 kb on - strand at 501.103 kb on - strand at 501.103 kb on - strand at 501.104 kb on - strand at 501.120 kb on - strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.161 kb on + strand at 501.179 kb on + strand at 501.207 kb on + strand at 501.207 kb on + strand at 501.207 kb on + strand at 501.207 kb on + strand at 501.208 kb on - strand at 501.215 kb on + strand at 501.215 kb on - strand at 501.217 kb on + strand, within CCNA_00485
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 498,389 + CCNA_00482 0.63 +0.5 498,389 + CCNA_00482 0.63 +0.3 498,389 + CCNA_00482 0.63 -0.6 498,389 + CCNA_00482 0.63 +0.1 498,390 + CCNA_00482 0.63 +1.0 498,390 + CCNA_00482 0.63 -0.9 498,394 + CCNA_00482 0.64 +1.0 498,397 - +3.7 498,397 - CCNA_00482 0.64 +0.1 498,397 - CCNA_00482 0.64 -1.9 498,498 + CCNA_00482 0.72 -0.0 498,498 + CCNA_00482 0.72 -0.5 498,501 + CCNA_00482 0.72 -0.1 498,507 - CCNA_00482 0.73 -1.5 498,518 - CCNA_00482 0.73 -0.0 498,545 + CCNA_00482 0.76 +0.6 498,550 + CCNA_00482 0.76 -0.5 498,550 + CCNA_00482 0.76 -1.1 498,550 + CCNA_00482 0.76 +0.7 498,558 + CCNA_00482 0.77 -0.5 498,558 - CCNA_00482 0.77 -0.6 498,558 - CCNA_00482 0.77 -2.2 498,567 + CCNA_00482 0.77 -0.3 498,630 + CCNA_00482 0.82 +0.4 498,630 + CCNA_00482 0.82 +0.2 498,630 + CCNA_00482 0.82 +0.1 498,630 + CCNA_00482 0.82 +0.2 498,638 - CCNA_00482 0.83 -2.5 498,660 - CCNA_00482 0.85 +0.4 498,665 + CCNA_00482 0.85 +0.9 498,676 + CCNA_00482 0.86 -0.9 498,676 + CCNA_00482 0.86 -1.0 498,684 - CCNA_00482 0.86 +2.1 498,684 - CCNA_00482 0.86 -0.6 498,732 + -0.3 498,732 + +3.0 498,732 + +2.0 498,732 + +0.5 498,740 - -0.4 498,767 + +1.1 498,774 + +1.9 498,781 + +1.7 498,816 + -1.5 498,816 + -0.6 498,816 + -1.4 498,816 + -0.2 498,824 - -0.9 498,824 - +0.6 498,824 - -0.5 498,824 - -2.3 498,849 + -1.9 498,850 + -0.9 498,850 + -0.7 498,864 + -0.2 498,864 + -0.5 498,864 + -1.1 498,869 + -0.4 498,869 + +0.5 498,869 + -0.5 498,877 - +0.1 498,877 - +0.1 498,913 + -1.7 498,943 - -0.5 498,980 - +0.1 498,980 - -0.3 499,005 - +0.1 499,022 - +1.7 499,385 - +2.9 499,385 - +0.7 499,385 - +2.0 499,480 + CCNA_00483 0.12 +1.0 499,480 + CCNA_00483 0.12 -0.3 499,480 + CCNA_00483 0.12 -0.8 499,480 + CCNA_00483 0.12 -1.1 499,480 + CCNA_00483 0.12 -1.5 499,480 + CCNA_00483 0.12 -0.5 499,488 - CCNA_00483 0.13 +1.8 499,499 + CCNA_00483 0.14 -0.6 499,507 - CCNA_00483 0.15 +1.5 499,509 + CCNA_00483 0.15 -0.0 499,517 - CCNA_00483 0.16 +1.3 499,519 + CCNA_00483 0.17 -0.9 499,522 - CCNA_00483 0.17 +1.9 499,522 - CCNA_00483 0.17 +1.3 499,532 - CCNA_00483 0.18 +1.6 499,675 - CCNA_00483 0.35 +1.5 499,676 - CCNA_00483 0.35 +1.6 499,676 - CCNA_00483 0.35 +1.3 499,676 - CCNA_00483 0.35 +1.2 499,708 + CCNA_00483 0.39 -0.7 499,708 + CCNA_00483 0.39 -0.4 499,717 - CCNA_00483 0.40 +1.6 499,738 + CCNA_00483 0.42 -3.1 499,751 - CCNA_00483 0.44 +2.1 499,777 - CCNA_00483 0.47 +1.9 499,799 - CCNA_00483 0.50 +1.4 499,818 - CCNA_00483 0.52 +1.2 499,824 - CCNA_00483 0.53 +0.7 499,895 - CCNA_00483 0.61 +1.1 499,989 + CCNA_00483 0.72 -1.3 499,989 + CCNA_00483 0.72 -1.4 499,997 - CCNA_00483 0.73 +1.0 499,997 - CCNA_00483 0.73 +2.0 500,002 - CCNA_00483 0.74 +1.1 500,032 - CCNA_00483 0.77 +1.7 500,035 + CCNA_00483 0.78 -1.4 500,043 - CCNA_00483 0.78 +2.7 500,092 - CCNA_00483 0.84 +1.6 500,140 + -1.6 500,216 - +1.7 500,228 + -1.5 500,270 + -0.9 500,343 + +0.9 500,363 + -1.4 500,363 + -0.3 500,364 + -1.3 500,371 - +0.3 500,374 + -1.5 500,434 + CCNA_00484 0.17 -0.2 500,441 + +0.7 500,455 + CCNA_00484 0.20 -2.6 500,503 + CCNA_00484 0.27 +0.9 500,521 + CCNA_00484 0.29 -1.7 500,521 + CCNA_00484 0.29 -1.0 500,529 - CCNA_00484 0.31 +1.6 500,553 - CCNA_00484 0.34 +3.1 500,614 + CCNA_00484 0.43 -0.7 500,716 + CCNA_00484 0.57 -0.3 500,724 - CCNA_00484 0.58 +1.4 500,754 - CCNA_00484 0.63 -0.1 500,777 + CCNA_00484 0.66 -0.3 500,825 - CCNA_00484 0.73 +1.6 500,825 - CCNA_00484 0.73 +1.1 500,849 + CCNA_00484 0.76 -0.1 500,856 - CCNA_00484 0.77 +1.2 500,902 + CCNA_00484 0.84 -1.8 500,902 + CCNA_00484 0.84 -3.2 500,910 - CCNA_00484 0.85 +0.3 500,910 - CCNA_00484 0.85 +0.4 500,939 - CCNA_00484 0.89 +1.6 500,979 - +1.3 501,002 + -2.5 501,010 - +0.9 501,046 - -0.6 501,050 + -0.3 501,054 - +1.0 501,059 - -1.5 501,073 - -0.6 501,096 + -0.4 501,103 - -0.1 501,103 - -0.7 501,103 - +0.2 501,104 - -2.2 501,120 - -1.1 501,134 + -0.4 501,134 + -1.4 501,134 + -1.9 501,134 + +0.4 501,134 + -1.0 501,134 + +0.7 501,134 + -1.1 501,134 + -1.4 501,142 - +0.4 501,142 - +0.7 501,142 - -0.4 501,142 - +1.1 501,142 - +1.7 501,142 - +0.2 501,142 - +0.7 501,142 - +1.0 501,142 - +0.9 501,142 - +1.7 501,142 - +0.0 501,161 + -1.0 501,179 + -1.1 501,207 + +0.3 501,207 + -1.0 501,207 + -0.5 501,207 + +2.7 501,208 - -1.9 501,215 + -2.5 501,215 - -3.2 501,217 + CCNA_00485 0.10 -1.6
Or see this region's nucleotide sequence