Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00420

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00417 and CCNA_00419 are separated by 234 nucleotidesCCNA_00419 and CCNA_00420 are separated by 64 nucleotidesCCNA_00420 and CCNA_00421 overlap by 4 nucleotidesCCNA_00421 and CCNA_00422 are separated by 49 nucleotides CCNA_00417: CCNA_00417 - hypothetical protein, at 430,127 to 430,498 _00417 CCNA_00419: CCNA_00419 - fasciclin domain cell surface protein, at 430,733 to 431,269 _00419 CCNA_00420: CCNA_00420 - hypothetical protein, at 431,334 to 431,885 _00420 CCNA_00421: CCNA_00421 - dihydroneopterin aldolase, at 431,882 to 432,286 _00421 CCNA_00422: CCNA_00422 - SDR pteridine reductase, at 432,336 to 433,088 _00422 Position (kb) 431 432Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 430.361 kb on + strand, within CCNA_00417at 430.374 kb on - strand, within CCNA_00417at 430.385 kb on + strand, within CCNA_00417at 430.436 kb on + strand, within CCNA_00417at 430.436 kb on + strand, within CCNA_00417at 430.444 kb on - strand, within CCNA_00417at 430.486 kb on - strandat 430.501 kb on - strandat 430.510 kb on + strandat 430.548 kb on - strandat 430.577 kb on + strandat 430.664 kb on + strandat 430.672 kb on - strandat 430.679 kb on + strandat 430.697 kb on - strandat 430.697 kb on - strandat 430.697 kb on - strandat 430.704 kb on + strandat 430.723 kb on + strandat 430.728 kb on + strandat 430.740 kb on + strandat 430.753 kb on - strandat 430.793 kb on + strand, within CCNA_00419at 430.813 kb on + strand, within CCNA_00419at 430.823 kb on + strand, within CCNA_00419at 430.861 kb on + strand, within CCNA_00419at 430.863 kb on + strand, within CCNA_00419at 430.876 kb on - strand, within CCNA_00419at 430.898 kb on - strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.905 kb on + strand, within CCNA_00419at 430.908 kb on - strand, within CCNA_00419at 430.912 kb on + strand, within CCNA_00419at 430.927 kb on + strand, within CCNA_00419at 430.935 kb on - strand, within CCNA_00419at 430.977 kb on + strand, within CCNA_00419at 430.977 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.989 kb on + strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 431.005 kb on + strand, within CCNA_00419at 431.013 kb on - strand, within CCNA_00419at 431.027 kb on + strand, within CCNA_00419at 431.027 kb on + strand, within CCNA_00419at 431.035 kb on - strand, within CCNA_00419at 431.035 kb on - strand, within CCNA_00419at 431.047 kb on + strand, within CCNA_00419at 431.056 kb on + strand, within CCNA_00419at 431.063 kb on + strand, within CCNA_00419at 431.068 kb on + strand, within CCNA_00419at 431.069 kb on + strand, within CCNA_00419at 431.077 kb on - strand, within CCNA_00419at 431.084 kb on + strand, within CCNA_00419at 431.092 kb on - strand, within CCNA_00419at 431.116 kb on - strand, within CCNA_00419at 431.134 kb on + strand, within CCNA_00419at 431.162 kb on + strand, within CCNA_00419at 431.162 kb on + strand, within CCNA_00419at 431.248 kb on - strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.295 kb on - strandat 431.295 kb on - strandat 431.366 kb on + strandat 431.366 kb on + strandat 431.374 kb on - strandat 431.402 kb on - strand, within CCNA_00420at 431.402 kb on - strand, within CCNA_00420at 431.402 kb on - strand, within CCNA_00420at 431.435 kb on - strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.452 kb on - strand, within CCNA_00420at 431.473 kb on - strand, within CCNA_00420at 431.473 kb on - strand, within CCNA_00420at 431.490 kb on + strand, within CCNA_00420at 431.490 kb on + strand, within CCNA_00420at 431.498 kb on - strand, within CCNA_00420at 431.498 kb on - strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.531 kb on - strand, within CCNA_00420at 431.534 kb on + strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.539 kb on + strand, within CCNA_00420at 431.539 kb on + strand, within CCNA_00420at 431.545 kb on + strand, within CCNA_00420at 431.556 kb on + strand, within CCNA_00420at 431.568 kb on - strand, within CCNA_00420at 431.575 kb on + strand, within CCNA_00420at 431.593 kb on + strand, within CCNA_00420at 431.593 kb on - strand, within CCNA_00420at 431.594 kb on - strand, within CCNA_00420at 431.598 kb on - strand, within CCNA_00420at 431.613 kb on + strand, within CCNA_00420at 431.621 kb on - strand, within CCNA_00420at 431.621 kb on - strand, within CCNA_00420at 431.662 kb on + strand, within CCNA_00420at 431.670 kb on - strand, within CCNA_00420at 431.670 kb on - strand, within CCNA_00420at 431.679 kb on + strand, within CCNA_00420at 431.757 kb on + strand, within CCNA_00420at 431.842 kb on + strandat 431.842 kb on + strandat 432.309 kb on + strandat 432.314 kb on + strandat 432.322 kb on + strandat 432.330 kb on - strandat 432.333 kb on + strandat 432.341 kb on - strandat 432.344 kb on - strandat 432.374 kb on - strandat 432.396 kb on + strandat 432.404 kb on - strandat 432.435 kb on - strand, within CCNA_00422at 432.452 kb on + strand, within CCNA_00422at 432.460 kb on - strand, within CCNA_00422at 432.533 kb on + strand, within CCNA_00422at 432.536 kb on - strand, within CCNA_00422at 432.545 kb on + strand, within CCNA_00422at 432.587 kb on - strand, within CCNA_00422at 432.588 kb on - strandat 432.591 kb on + strand, within CCNA_00422at 432.591 kb on + strand, within CCNA_00422at 432.598 kb on - strand, within CCNA_00422at 432.616 kb on + strand, within CCNA_00422at 432.621 kb on + strand, within CCNA_00422at 432.626 kb on + strand, within CCNA_00422at 432.724 kb on + strand, within CCNA_00422at 432.732 kb on - strand, within CCNA_00422at 432.760 kb on - strand, within CCNA_00422at 432.793 kb on + strand, within CCNA_00422at 432.824 kb on - strand, within CCNA_00422

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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430,361 + CCNA_00417 0.63 -0.0
430,374 - CCNA_00417 0.66 -0.9
430,385 + CCNA_00417 0.69 -1.5
430,436 + CCNA_00417 0.83 +0.3
430,436 + CCNA_00417 0.83 -0.2
430,444 - CCNA_00417 0.85 -0.3
430,486 - +0.6
430,501 - -0.9
430,510 + +0.6
430,548 - +1.3
430,577 + -2.1
430,664 + +0.3
430,672 - -0.5
430,679 + +0.8
430,697 - -0.5
430,697 - +1.8
430,697 - -1.1
430,704 + -0.2
430,723 + -0.2
430,728 + +0.5
430,740 + -1.3
430,753 - -2.0
430,793 + CCNA_00419 0.11 +0.2
430,813 + CCNA_00419 0.15 -2.2
430,823 + CCNA_00419 0.17 -1.5
430,861 + CCNA_00419 0.24 +0.5
430,863 + CCNA_00419 0.24 +0.1
430,876 - CCNA_00419 0.27 -0.7
430,898 - CCNA_00419 0.31 -0.8
430,900 + CCNA_00419 0.31 -0.1
430,900 + CCNA_00419 0.31 -0.3
430,900 + CCNA_00419 0.31 +0.3
430,905 + CCNA_00419 0.32 +0.5
430,908 - CCNA_00419 0.33 -1.9
430,912 + CCNA_00419 0.33 +0.3
430,927 + CCNA_00419 0.36 +0.6
430,935 - CCNA_00419 0.38 -0.5
430,977 + CCNA_00419 0.45 -1.2
430,977 + CCNA_00419 0.45 -0.3
430,982 + CCNA_00419 0.46 +2.0
430,982 + CCNA_00419 0.46 +0.9
430,982 + CCNA_00419 0.46 +0.1
430,982 + CCNA_00419 0.46 +0.7
430,982 + CCNA_00419 0.46 -0.2
430,982 + CCNA_00419 0.46 +1.0
430,989 + CCNA_00419 0.48 -0.5
430,990 - CCNA_00419 0.48 -1.0
430,990 - CCNA_00419 0.48 -0.4
430,990 - CCNA_00419 0.48 -0.4
430,990 - CCNA_00419 0.48 -2.9
430,990 - CCNA_00419 0.48 -0.7
430,990 - CCNA_00419 0.48 +0.3
430,990 - CCNA_00419 0.48 -1.6
430,990 - CCNA_00419 0.48 -0.3
430,990 - CCNA_00419 0.48 -0.2
431,005 + CCNA_00419 0.51 +0.4
431,013 - CCNA_00419 0.52 +1.3
431,027 + CCNA_00419 0.55 +1.1
431,027 + CCNA_00419 0.55 -1.4
431,035 - CCNA_00419 0.56 +0.2
431,035 - CCNA_00419 0.56 -1.1
431,047 + CCNA_00419 0.58 -0.0
431,056 + CCNA_00419 0.60 -0.3
431,063 + CCNA_00419 0.61 -0.5
431,068 + CCNA_00419 0.62 -0.1
431,069 + CCNA_00419 0.63 -1.1
431,077 - CCNA_00419 0.64 -0.1
431,084 + CCNA_00419 0.65 +1.4
431,092 - CCNA_00419 0.67 +0.3
431,116 - CCNA_00419 0.71 -0.7
431,134 + CCNA_00419 0.75 +1.0
431,162 + CCNA_00419 0.80 +0.2
431,162 + CCNA_00419 0.80 +0.1
431,248 - -0.8
431,287 + +1.0
431,287 + +1.0
431,287 + +1.7
431,287 + +0.9
431,295 - -0.7
431,295 - -2.1
431,366 + -2.0
431,366 + -3.2
431,374 - +1.2
431,402 - CCNA_00420 0.12 +1.0
431,402 - CCNA_00420 0.12 +0.2
431,402 - CCNA_00420 0.12 +0.6
431,435 - CCNA_00420 0.18 +0.8
431,444 + CCNA_00420 0.20 -0.8
431,444 + CCNA_00420 0.20 -0.4
431,444 + CCNA_00420 0.20 +1.8
431,444 + CCNA_00420 0.20 -1.1
431,444 + CCNA_00420 0.20 -0.8
431,444 + CCNA_00420 0.20 -1.0
431,444 + CCNA_00420 0.20 -1.1
431,452 - CCNA_00420 0.21 +0.5
431,473 - CCNA_00420 0.25 +1.8
431,473 - CCNA_00420 0.25 +2.8
431,490 + CCNA_00420 0.28 +0.3
431,490 + CCNA_00420 0.28 +1.1
431,498 - CCNA_00420 0.30 +0.8
431,498 - CCNA_00420 0.30 +0.7
431,529 + CCNA_00420 0.35 -1.3
431,529 + CCNA_00420 0.35 -1.1
431,529 + CCNA_00420 0.35 +1.1
431,529 + CCNA_00420 0.35 +1.6
431,529 + CCNA_00420 0.35 -1.2
431,531 - CCNA_00420 0.36 +0.5
431,534 + CCNA_00420 0.36 -1.0
431,537 - CCNA_00420 0.37 +1.0
431,537 - CCNA_00420 0.37 +2.6
431,537 - CCNA_00420 0.37 +1.2
431,537 - CCNA_00420 0.37 +2.1
431,539 + CCNA_00420 0.37 -0.4
431,539 + CCNA_00420 0.37 -3.9
431,545 + CCNA_00420 0.38 -2.4
431,556 + CCNA_00420 0.40 -0.8
431,568 - CCNA_00420 0.42 +1.4
431,575 + CCNA_00420 0.44 -0.7
431,593 + CCNA_00420 0.47 -3.3
431,593 - CCNA_00420 0.47 +0.7
431,594 - CCNA_00420 0.47 +0.8
431,598 - CCNA_00420 0.48 +0.7
431,613 + CCNA_00420 0.51 -1.0
431,621 - CCNA_00420 0.52 +0.7
431,621 - CCNA_00420 0.52 +0.9
431,662 + CCNA_00420 0.59 +1.3
431,670 - CCNA_00420 0.61 +1.5
431,670 - CCNA_00420 0.61 +1.4
431,679 + CCNA_00420 0.62 +0.7
431,757 + CCNA_00420 0.77 -0.5
431,842 + -1.3
431,842 + -0.1
432,309 + -0.3
432,314 + -0.5
432,322 + +1.2
432,330 - +1.5
432,333 + -1.4
432,341 - +0.8
432,344 - +1.5
432,374 - -0.1
432,396 + -1.9
432,404 - +0.9
432,435 - CCNA_00422 0.13 -0.7
432,452 + CCNA_00422 0.15 -2.5
432,460 - CCNA_00422 0.16 +0.4
432,533 + CCNA_00422 0.26 -0.8
432,536 - CCNA_00422 0.27 -2.9
432,545 + CCNA_00422 0.28 +1.2
432,587 - CCNA_00422 0.33 +0.5
432,588 - +0.5
432,591 + CCNA_00422 0.34 +1.2
432,591 + CCNA_00422 0.34 -2.6
432,598 - CCNA_00422 0.35 +0.7
432,616 + CCNA_00422 0.37 -0.7
432,621 + CCNA_00422 0.38 -0.8
432,626 + CCNA_00422 0.39 -0.6
432,724 + CCNA_00422 0.52 +0.5
432,732 - CCNA_00422 0.53 +2.2
432,760 - CCNA_00422 0.56 +1.1
432,793 + CCNA_00422 0.61 -1.1
432,824 - CCNA_00422 0.65 +0.2

Or see this region's nucleotide sequence