Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20295

Experiment: R2A with copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with copper (II) chloride 0.16 mM
5,010,144	-		CA265_RS20290	0.33	+0.9
5,010,147	+		CA265_RS20290	0.34	+1.2
5,010,147	+		CA265_RS20290	0.34	-1.4
5,010,148	-		CA265_RS20290	0.34	-0.1
5,010,148	-		CA265_RS20290	0.34	-0.2
5,010,148	-		CA265_RS20290	0.34	-1.4
5,010,173	-		CA265_RS20290	0.35	+1.3
5,010,210	-		CA265_RS20290	0.38	-2.2
5,010,249	+		CA265_RS20290	0.41	-2.3
5,010,249	+		CA265_RS20290	0.41	-2.0
5,010,399	+		CA265_RS20290	0.51	-1.4
5,010,400	-		CA265_RS20290	0.51	+0.5
5,010,400	-		CA265_RS20290	0.51	+1.0
5,010,402	+		CA265_RS20290	0.51	-1.3
5,010,403	-		CA265_RS20290	0.51	+0.9
5,010,415	-		CA265_RS20290	0.52	+0.7
5,010,415	-		CA265_RS20290	0.52	-0.4
5,010,419	-		CA265_RS20290	0.52	-0.6
5,010,419	-		CA265_RS20290	0.52	-0.1
5,010,421	+		CA265_RS20290	0.52	-0.6
5,010,421	+		CA265_RS20290	0.52	-0.1
5,010,474	-		CA265_RS20290	0.56	-0.3
5,010,482	+		CA265_RS20290	0.56	-0.2
5,010,482	+		CA265_RS20290	0.56	+1.5
5,010,482	+		CA265_RS20290	0.56	-0.0
5,010,483	-		CA265_RS20290	0.56	+1.1
5,010,483	-		CA265_RS20290	0.56	+1.7
5,010,544	+		CA265_RS20290	0.61	+0.0
5,010,594	+		CA265_RS20290	0.64	+1.0
5,010,626	+		CA265_RS20290	0.66	-0.6
5,010,626	+		CA265_RS20290	0.66	+1.4
5,010,627	-		CA265_RS20290	0.66	+0.6
5,010,627	-		CA265_RS20290	0.66	+0.1
5,010,627	-		CA265_RS20290	0.66	-1.1
5,010,628	+		CA265_RS20290	0.66	+0.1
5,010,658	+		CA265_RS20290	0.68	+0.4
5,010,712	+		CA265_RS20290	0.72	+1.3
5,010,712	+		CA265_RS20290	0.72	-1.4
5,010,731	+		CA265_RS20290	0.73	+0.2
5,010,740	-		CA265_RS20290	0.74	+1.5
5,010,740	-		CA265_RS20290	0.74	-0.4
5,010,761	+		CA265_RS20290	0.75	+1.0
5,010,761	+		CA265_RS20290	0.75	+0.6
5,010,762	-		CA265_RS20290	0.75	+0.3
5,010,762	-		CA265_RS20290	0.75	-2.0
5,010,816	+		CA265_RS20290	0.79	-0.1
5,010,817	-		CA265_RS20290	0.79	+0.2
5,010,840	+		CA265_RS20290	0.81	+1.3
5,010,841	-		CA265_RS20290	0.81	+0.0
5,010,841	-		CA265_RS20290	0.81	+2.1
5,010,841	-		CA265_RS20290	0.81	-0.0
5,010,843	+		CA265_RS20290	0.81	+1.6
5,010,886	-		CA265_RS20290	0.84	+1.4
5,010,925	+		CA265_RS20290	0.86	+0.8
5,010,939	+		CA265_RS20290	0.87	+0.9
5,010,939	+		CA265_RS20290	0.87	+0.8
5,010,940	-		CA265_RS20290	0.87	+0.5
5,011,076	-				-0.3
5,011,139	+				-0.6
5,011,145	+				+0.2
5,011,159	+				+1.6
5,011,172	+				-0.8
5,011,172	+				-1.2
5,011,172	+				+0.0
5,011,250	-				+0.7
5,011,250	-				+0.1
5,011,272	-				+1.2
5,011,272	-				+0.5
5,011,272	-				+2.2
5,011,305	+				+1.0
5,011,318	-				+0.8
5,011,406	+				+1.2
5,011,406	+				+0.7
5,011,407	-				+1.2
5,011,442	+				-0.7
5,011,442	+				+0.6
5,011,443	-				+1.5
5,011,487	+		CA265_RS20295	0.11	+0.6
5,011,487	+		CA265_RS20295	0.11	+2.1
5,011,507	+		CA265_RS20295	0.12	+0.3
5,011,508	-		CA265_RS20295	0.12	+0.5
5,011,508	-		CA265_RS20295	0.12	-0.7
5,011,575	-		CA265_RS20295	0.14	-0.3
5,011,606	+		CA265_RS20295	0.15	+0.4
5,011,607	-		CA265_RS20295	0.15	+0.2
5,011,626	+		CA265_RS20295	0.15	-0.5
5,011,678	+		CA265_RS20295	0.17	+0.9
5,011,688	-		CA265_RS20295	0.17	+0.4
5,011,698	+		CA265_RS20295	0.18	+0.0
5,011,766	-		CA265_RS20295	0.20	-1.8
5,011,787	+		CA265_RS20295	0.21	+0.7
5,011,800	+		CA265_RS20295	0.21	+1.9
5,011,867	+		CA265_RS20295	0.23	-0.0
5,011,930	+		CA265_RS20295	0.25	+0.7
5,011,951	+		CA265_RS20295	0.26	+1.0
5,011,951	+		CA265_RS20295	0.26	+0.5
5,011,952	-		CA265_RS20295	0.26	+1.0
5,011,973	-		CA265_RS20295	0.26	-1.8
5,011,987	+		CA265_RS20295	0.27	+1.3
5,012,036	-		CA265_RS20295	0.29	-0.8
5,012,037	+		CA265_RS20295	0.29	+0.4
5,012,040	+		CA265_RS20295	0.29	+2.0
5,012,060	+		CA265_RS20295	0.29	+1.1
5,012,061	-		CA265_RS20295	0.29	+2.2
5,012,063	+		CA265_RS20295	0.29	+1.7
5,012,081	-		CA265_RS20295	0.30	+0.5
5,012,085	+		CA265_RS20295	0.30	+1.1
5,012,145	+		CA265_RS20295	0.32	-0.6
5,012,148	+		CA265_RS20295	0.32	+1.4
5,012,249	+		CA265_RS20295	0.35	-1.6
5,012,254	-		CA265_RS20295	0.35	-0.5
5,012,262	+		CA265_RS20295	0.36	+0.7
5,012,262	+		CA265_RS20295	0.36	+1.6
5,012,262	+		CA265_RS20295	0.36	+0.0
5,012,263	-		CA265_RS20295	0.36	-1.4
5,012,265	-		CA265_RS20295	0.36	-1.7
5,012,265	-		CA265_RS20295	0.36	+1.5
5,012,267	-		CA265_RS20295	0.36	+0.5
5,012,289	+		CA265_RS20295	0.37	-0.4
5,012,358	+		CA265_RS20295	0.39	+0.0
5,012,434	-		CA265_RS20295	0.41	-0.9
5,012,450	-		CA265_RS20295	0.42	+0.1
5,012,453	+		CA265_RS20295	0.42	+0.1
5,012,454	-		CA265_RS20295	0.42	+0.1
5,012,466	+		CA265_RS20295	0.42	+1.2
5,012,492	-		CA265_RS20295	0.43	+0.4
5,012,535	-		CA265_RS20295	0.44	+0.8
5,012,539	+		CA265_RS20295	0.45	+1.0
5,012,547	+		CA265_RS20295	0.45	+0.7
5,012,548	-		CA265_RS20295	0.45	+1.7
5,012,575	+		CA265_RS20295	0.46	+1.8
5,012,721	+		CA265_RS20295	0.50	+0.5
5,012,730	+		CA265_RS20295	0.51	+1.0
5,012,731	-		CA265_RS20295	0.51	+2.0
5,012,809	+		CA265_RS20295	0.53	+0.2
5,012,810	-		CA265_RS20295	0.53	-0.5
5,012,821	-		CA265_RS20295	0.54	-2.1
5,012,823	-		CA265_RS20295	0.54	+1.8
5,012,906	+		CA265_RS20295	0.56	+1.1
5,012,943	+		CA265_RS20295	0.57	-0.5
5,012,948	+		CA265_RS20295	0.58	-1.0
5,012,951	+		CA265_RS20295	0.58	-2.0
5,012,955	+		CA265_RS20295	0.58	+1.6
5,012,956	-		CA265_RS20295	0.58	-0.1
5,012,957	+		CA265_RS20295	0.58	-1.6
5,012,992	-		CA265_RS20295	0.59	-0.4
5,013,033	+		CA265_RS20295	0.60	-2.1
5,013,042	+		CA265_RS20295	0.61	-0.7
5,013,046	+		CA265_RS20295	0.61	+0.5
5,013,052	-		CA265_RS20295	0.61	-1.5
5,013,109	-		CA265_RS20295	0.63	-1.2
5,013,119	+		CA265_RS20295	0.63	+3.5
5,013,119	+		CA265_RS20295	0.63	+0.4
5,013,120	-		CA265_RS20295	0.63	-0.0
5,013,120	-		CA265_RS20295	0.63	+0.8
5,013,120	-		CA265_RS20295	0.63	+1.5
5,013,198	+		CA265_RS20295	0.66	+1.6
5,013,202	-		CA265_RS20295	0.66	+0.8
5,013,209	-		CA265_RS20295	0.66	+0.7
5,013,213	-		CA265_RS20295	0.66	-0.5
5,013,245	+		CA265_RS20295	0.67	-0.7
5,013,249	-		CA265_RS20295	0.67	+1.7
5,013,310	-		CA265_RS20295	0.69	+0.5
5,013,313	+		CA265_RS20295	0.69	+0.1
5,013,314	-		CA265_RS20295	0.69	+0.7
5,013,315	+		CA265_RS20295	0.69	+1.1
5,013,426	-		CA265_RS20295	0.73	+1.8
5,013,487	-		CA265_RS20295	0.75	+1.3
5,013,488	+		CA265_RS20295	0.75	+2.5
5,013,489	-		CA265_RS20295	0.75	-1.1
5,013,489	-		CA265_RS20295	0.75	+1.0
5,013,489	-		CA265_RS20295	0.75	+1.3
5,013,495	-		CA265_RS20295	0.75	+0.4
5,013,544	-		CA265_RS20295	0.77	-0.4
5,013,555	+		CA265_RS20295	0.77	+0.0
5,013,585	-		CA265_RS20295	0.78	-1.8
5,013,613	+		CA265_RS20295	0.79	+1.0
5,013,643	+		CA265_RS20295	0.80	+2.5
5,013,669	+		CA265_RS20295	0.81	+1.3
5,013,672	+		CA265_RS20295	0.81	-2.1
5,013,705	+		CA265_RS20295	0.82	-0.4
5,013,709	+		CA265_RS20295	0.82	-0.3
5,013,709	+		CA265_RS20295	0.82	+0.3
5,013,710	-		CA265_RS20295	0.82	-0.1
5,013,718	-		CA265_RS20295	0.82	+1.6
5,013,725	-		CA265_RS20295	0.82	+0.7
5,013,900	+		CA265_RS20295	0.88	-0.7
5,013,901	-		CA265_RS20295	0.88	-0.1
5,013,901	-		CA265_RS20295	0.88	-0.4
5,013,901	-		CA265_RS20295	0.88	-1.3
5,014,001	-				+0.9
5,014,001	-				+0.9
5,014,003	+				-0.1
5,014,008	+				-2.3
5,014,038	-				+0.4
5,014,042	+				+1.0
5,014,043	-				-1.1
5,014,078	+				-1.0
5,014,138	-				+0.4
5,014,144	+				+0.4
5,014,145	-				-1.9
5,014,151	-				+0.5
5,014,151	-				-0.0
5,014,165	+				-0.2
5,014,289	+				-1.4
5,014,302	+				-1.2
5,014,366	-				-2.8
5,014,402	+				-0.9
5,014,403	-				-4.4
5,014,452	+				-1.8
5,014,469	-				-4.0
5,014,480	+				+1.8
5,014,481	-				-3.0
5,014,513	-				-1.5
5,014,523	+				-1.1
5,014,574	-				-2.4
5,014,579	+				+1.5
5,014,579	+				+0.3
5,014,579	+				+0.6
5,014,580	-				-0.1
5,014,580	-				-3.6
5,014,628	+				-0.5
5,014,629	-				-4.2
5,014,634	-				-3.4
5,014,634	-				-2.8
5,014,719	-		CA265_RS20300	0.18	-2.3
5,014,719	-		CA265_RS20300	0.18	-4.7
5,014,731	+		CA265_RS20300	0.20	-0.1
5,014,748	+		CA265_RS20300	0.22	+0.6
5,014,793	+		CA265_RS20300	0.29	-0.7
5,014,813	+		CA265_RS20300	0.32	-1.0
5,014,823	+		CA265_RS20300	0.33	-0.6
5,014,824	-		CA265_RS20300	0.34	-0.2
5,014,824	-		CA265_RS20300	0.34	-1.0
5,014,957	-		CA265_RS20300	0.53	+0.0
5,014,975	-		CA265_RS20300	0.56	-0.4
5,014,976	+		CA265_RS20300	0.56	+0.9
5,014,976	+		CA265_RS20300	0.56	-1.5
5,014,976	+		CA265_RS20300	0.56	-2.7
5,014,977	-		CA265_RS20300	0.56	-1.1
5,014,977	-		CA265_RS20300	0.56	-0.1
5,015,021	-		CA265_RS20300	0.63	-0.4
5,015,027	+		CA265_RS20300	0.64	-1.8
5,015,028	-		CA265_RS20300	0.64	-2.7
5,015,039	+		CA265_RS20300	0.65	-1.3
5,015,079	-		CA265_RS20300	0.71	+0.7
5,015,100	+		CA265_RS20300	0.74	-3.2
5,015,247	+				-2.7
5,015,250	+				-1.1