Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17230 and CA265_RS17235 are separated by 62 nucleotides CA265_RS17235 and CA265_RS17240 are separated by 4 nucleotides CA265_RS17240 and CA265_RS17245 are separated by 96 nucleotides
CA265_RS17230: CA265_RS17230 - D-glycerate dehydrogenase, at 4,302,210 to 4,303,169
_RS17230
CA265_RS17235: CA265_RS17235 - hypothetical protein, at 4,303,232 to 4,304,041
_RS17235
CA265_RS17240: CA265_RS17240 - collagen-binding protein, at 4,304,046 to 4,306,370
_RS17240
CA265_RS17245: CA265_RS17245 - hypothetical protein, at 4,306,467 to 4,307,666
_RS17245
Position (kb) 4304
4305
4306
4307 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4303.104 kb on + strand at 4303.104 kb on + strand at 4303.105 kb on - strand at 4303.155 kb on + strand at 4303.162 kb on - strand at 4303.249 kb on + strand at 4303.250 kb on - strand at 4303.260 kb on + strand at 4303.265 kb on - strand at 4303.396 kb on + strand, within CA265_RS17235 at 4303.469 kb on - strand, within CA265_RS17235 at 4303.488 kb on - strand, within CA265_RS17235 at 4303.505 kb on + strand, within CA265_RS17235 at 4303.517 kb on - strand, within CA265_RS17235 at 4303.538 kb on + strand, within CA265_RS17235 at 4303.554 kb on + strand, within CA265_RS17235 at 4303.604 kb on + strand, within CA265_RS17235 at 4303.604 kb on + strand, within CA265_RS17235 at 4303.645 kb on + strand, within CA265_RS17235 at 4303.701 kb on + strand, within CA265_RS17235 at 4303.701 kb on + strand, within CA265_RS17235 at 4303.728 kb on - strand, within CA265_RS17235 at 4303.734 kb on + strand, within CA265_RS17235 at 4303.739 kb on - strand, within CA265_RS17235 at 4303.771 kb on - strand, within CA265_RS17235 at 4303.816 kb on + strand, within CA265_RS17235 at 4303.816 kb on + strand, within CA265_RS17235 at 4303.931 kb on - strand, within CA265_RS17235 at 4304.024 kb on + strand at 4304.025 kb on - strand at 4304.066 kb on + strand at 4304.179 kb on + strand at 4304.179 kb on + strand at 4304.260 kb on + strand at 4304.288 kb on + strand, within CA265_RS17240 at 4304.288 kb on + strand, within CA265_RS17240 at 4304.289 kb on - strand, within CA265_RS17240 at 4304.291 kb on - strand, within CA265_RS17240 at 4304.294 kb on - strand, within CA265_RS17240 at 4304.294 kb on - strand, within CA265_RS17240 at 4304.341 kb on - strand, within CA265_RS17240 at 4304.348 kb on + strand, within CA265_RS17240 at 4304.360 kb on - strand, within CA265_RS17240 at 4304.401 kb on + strand, within CA265_RS17240 at 4304.420 kb on + strand, within CA265_RS17240 at 4304.421 kb on - strand, within CA265_RS17240 at 4304.430 kb on - strand, within CA265_RS17240 at 4304.453 kb on - strand, within CA265_RS17240 at 4304.466 kb on - strand, within CA265_RS17240 at 4304.501 kb on + strand, within CA265_RS17240 at 4304.502 kb on - strand, within CA265_RS17240 at 4304.502 kb on - strand, within CA265_RS17240 at 4304.502 kb on - strand, within CA265_RS17240 at 4304.502 kb on - strand, within CA265_RS17240 at 4304.658 kb on - strand, within CA265_RS17240 at 4304.662 kb on + strand, within CA265_RS17240 at 4304.684 kb on - strand, within CA265_RS17240 at 4304.750 kb on + strand, within CA265_RS17240 at 4304.750 kb on + strand, within CA265_RS17240 at 4304.750 kb on + strand, within CA265_RS17240 at 4304.751 kb on - strand, within CA265_RS17240 at 4304.751 kb on - strand, within CA265_RS17240 at 4304.767 kb on + strand, within CA265_RS17240 at 4304.768 kb on - strand, within CA265_RS17240 at 4304.803 kb on - strand, within CA265_RS17240 at 4304.807 kb on + strand, within CA265_RS17240 at 4304.807 kb on + strand, within CA265_RS17240 at 4304.812 kb on - strand, within CA265_RS17240 at 4304.898 kb on - strand, within CA265_RS17240 at 4304.924 kb on + strand, within CA265_RS17240 at 4304.948 kb on + strand, within CA265_RS17240 at 4304.965 kb on + strand, within CA265_RS17240 at 4305.063 kb on - strand, within CA265_RS17240 at 4305.188 kb on + strand, within CA265_RS17240 at 4305.194 kb on + strand, within CA265_RS17240 at 4305.274 kb on - strand, within CA265_RS17240 at 4305.289 kb on + strand, within CA265_RS17240 at 4305.289 kb on + strand, within CA265_RS17240 at 4305.293 kb on + strand, within CA265_RS17240 at 4305.293 kb on + strand, within CA265_RS17240 at 4305.293 kb on + strand, within CA265_RS17240 at 4305.293 kb on + strand, within CA265_RS17240 at 4305.296 kb on - strand, within CA265_RS17240 at 4305.296 kb on - strand, within CA265_RS17240 at 4305.300 kb on - strand, within CA265_RS17240 at 4305.370 kb on - strand, within CA265_RS17240 at 4305.410 kb on + strand, within CA265_RS17240 at 4305.465 kb on - strand, within CA265_RS17240 at 4305.483 kb on - strand, within CA265_RS17240 at 4305.552 kb on - strand, within CA265_RS17240 at 4305.553 kb on + strand, within CA265_RS17240 at 4305.576 kb on - strand, within CA265_RS17240 at 4305.594 kb on + strand, within CA265_RS17240 at 4305.594 kb on + strand, within CA265_RS17240 at 4305.616 kb on - strand, within CA265_RS17240 at 4305.630 kb on + strand, within CA265_RS17240 at 4305.639 kb on - strand, within CA265_RS17240 at 4305.683 kb on + strand, within CA265_RS17240 at 4305.690 kb on + strand, within CA265_RS17240 at 4305.728 kb on + strand, within CA265_RS17240 at 4305.729 kb on - strand, within CA265_RS17240 at 4305.730 kb on - strand, within CA265_RS17240 at 4305.740 kb on - strand, within CA265_RS17240 at 4305.741 kb on + strand, within CA265_RS17240 at 4305.741 kb on + strand, within CA265_RS17240 at 4305.747 kb on + strand, within CA265_RS17240 at 4305.792 kb on + strand, within CA265_RS17240 at 4305.793 kb on - strand, within CA265_RS17240 at 4305.808 kb on + strand, within CA265_RS17240 at 4305.865 kb on + strand, within CA265_RS17240 at 4306.007 kb on + strand, within CA265_RS17240 at 4306.038 kb on + strand, within CA265_RS17240 at 4306.138 kb on + strand at 4306.139 kb on - strand at 4306.192 kb on + strand at 4306.218 kb on - strand at 4306.350 kb on + strand at 4306.350 kb on + strand at 4306.351 kb on - strand at 4306.351 kb on - strand at 4306.354 kb on + strand at 4306.380 kb on + strand at 4306.472 kb on + strand at 4306.473 kb on - strand at 4306.524 kb on + strand at 4306.581 kb on - strand at 4306.658 kb on + strand, within CA265_RS17245 at 4306.757 kb on + strand, within CA265_RS17245 at 4306.757 kb on + strand, within CA265_RS17245 at 4306.757 kb on + strand, within CA265_RS17245 at 4306.767 kb on + strand, within CA265_RS17245 at 4306.834 kb on + strand, within CA265_RS17245 at 4306.837 kb on + strand, within CA265_RS17245 at 4306.838 kb on - strand, within CA265_RS17245 at 4306.872 kb on + strand, within CA265_RS17245 at 4306.952 kb on + strand, within CA265_RS17245 at 4306.998 kb on - strand, within CA265_RS17245 at 4307.125 kb on + strand, within CA265_RS17245 at 4307.231 kb on - strand, within CA265_RS17245 at 4307.269 kb on + strand, within CA265_RS17245 at 4307.269 kb on + strand, within CA265_RS17245 at 4307.270 kb on + strand, within CA265_RS17245 at 4307.276 kb on - strand, within CA265_RS17245 at 4307.280 kb on - strand, within CA265_RS17245 at 4307.347 kb on + strand, within CA265_RS17245 at 4307.370 kb on - strand, within CA265_RS17245 at 4307.370 kb on - strand, within CA265_RS17245
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 4,303,104 + +2.2 4,303,104 + +1.2 4,303,105 - -1.1 4,303,155 + +0.9 4,303,162 - -0.5 4,303,249 + +1.1 4,303,250 - -1.6 4,303,260 + -0.3 4,303,265 - +1.0 4,303,396 + CA265_RS17235 0.20 +0.3 4,303,469 - CA265_RS17235 0.29 -1.5 4,303,488 - CA265_RS17235 0.32 +1.0 4,303,505 + CA265_RS17235 0.34 -0.2 4,303,517 - CA265_RS17235 0.35 -0.7 4,303,538 + CA265_RS17235 0.38 -0.6 4,303,554 + CA265_RS17235 0.40 -0.2 4,303,604 + CA265_RS17235 0.46 +0.7 4,303,604 + CA265_RS17235 0.46 -1.3 4,303,645 + CA265_RS17235 0.51 +0.2 4,303,701 + CA265_RS17235 0.58 +0.7 4,303,701 + CA265_RS17235 0.58 +2.1 4,303,728 - CA265_RS17235 0.61 -0.1 4,303,734 + CA265_RS17235 0.62 +0.2 4,303,739 - CA265_RS17235 0.63 -1.0 4,303,771 - CA265_RS17235 0.67 -1.2 4,303,816 + CA265_RS17235 0.72 +0.5 4,303,816 + CA265_RS17235 0.72 +2.2 4,303,931 - CA265_RS17235 0.86 +0.1 4,304,024 + +0.7 4,304,025 - +0.3 4,304,066 + -0.6 4,304,179 + +0.7 4,304,179 + -1.7 4,304,260 + +0.1 4,304,288 + CA265_RS17240 0.10 +1.6 4,304,288 + CA265_RS17240 0.10 +0.6 4,304,289 - CA265_RS17240 0.10 -0.2 4,304,291 - CA265_RS17240 0.11 -2.7 4,304,294 - CA265_RS17240 0.11 -1.4 4,304,294 - CA265_RS17240 0.11 +0.3 4,304,341 - CA265_RS17240 0.13 +0.9 4,304,348 + CA265_RS17240 0.13 -1.7 4,304,360 - CA265_RS17240 0.14 +0.3 4,304,401 + CA265_RS17240 0.15 -1.6 4,304,420 + CA265_RS17240 0.16 +0.7 4,304,421 - CA265_RS17240 0.16 +0.9 4,304,430 - CA265_RS17240 0.17 +0.7 4,304,453 - CA265_RS17240 0.18 +1.1 4,304,466 - CA265_RS17240 0.18 -2.0 4,304,501 + CA265_RS17240 0.20 +0.7 4,304,502 - CA265_RS17240 0.20 +0.4 4,304,502 - CA265_RS17240 0.20 +0.9 4,304,502 - CA265_RS17240 0.20 -1.1 4,304,502 - CA265_RS17240 0.20 +0.7 4,304,658 - CA265_RS17240 0.26 -0.4 4,304,662 + CA265_RS17240 0.26 +0.0 4,304,684 - CA265_RS17240 0.27 +1.1 4,304,750 + CA265_RS17240 0.30 +0.3 4,304,750 + CA265_RS17240 0.30 -0.4 4,304,750 + CA265_RS17240 0.30 -0.0 4,304,751 - CA265_RS17240 0.30 -0.2 4,304,751 - CA265_RS17240 0.30 -0.1 4,304,767 + CA265_RS17240 0.31 -0.1 4,304,768 - CA265_RS17240 0.31 +0.3 4,304,803 - CA265_RS17240 0.33 -1.6 4,304,807 + CA265_RS17240 0.33 +1.4 4,304,807 + CA265_RS17240 0.33 -0.2 4,304,812 - CA265_RS17240 0.33 +0.9 4,304,898 - CA265_RS17240 0.37 -0.1 4,304,924 + CA265_RS17240 0.38 +0.1 4,304,948 + CA265_RS17240 0.39 -1.1 4,304,965 + CA265_RS17240 0.40 -2.2 4,305,063 - CA265_RS17240 0.44 -0.2 4,305,188 + CA265_RS17240 0.49 +0.7 4,305,194 + CA265_RS17240 0.49 -0.1 4,305,274 - CA265_RS17240 0.53 +0.1 4,305,289 + CA265_RS17240 0.53 +0.7 4,305,289 + CA265_RS17240 0.53 +2.0 4,305,293 + CA265_RS17240 0.54 -1.4 4,305,293 + CA265_RS17240 0.54 +0.1 4,305,293 + CA265_RS17240 0.54 -0.9 4,305,293 + CA265_RS17240 0.54 +1.2 4,305,296 - CA265_RS17240 0.54 -1.3 4,305,296 - CA265_RS17240 0.54 -1.9 4,305,300 - CA265_RS17240 0.54 -3.8 4,305,370 - CA265_RS17240 0.57 +0.4 4,305,410 + CA265_RS17240 0.59 -0.1 4,305,465 - CA265_RS17240 0.61 -0.9 4,305,483 - CA265_RS17240 0.62 +0.0 4,305,552 - CA265_RS17240 0.65 -0.4 4,305,553 + CA265_RS17240 0.65 +0.1 4,305,576 - CA265_RS17240 0.66 -0.9 4,305,594 + CA265_RS17240 0.67 +1.9 4,305,594 + CA265_RS17240 0.67 +0.2 4,305,616 - CA265_RS17240 0.68 -0.2 4,305,630 + CA265_RS17240 0.68 -0.9 4,305,639 - CA265_RS17240 0.69 +0.5 4,305,683 + CA265_RS17240 0.70 -0.3 4,305,690 + CA265_RS17240 0.71 -2.0 4,305,728 + CA265_RS17240 0.72 -2.3 4,305,729 - CA265_RS17240 0.72 -0.2 4,305,730 - CA265_RS17240 0.72 -0.8 4,305,740 - CA265_RS17240 0.73 +0.2 4,305,741 + CA265_RS17240 0.73 +2.7 4,305,741 + CA265_RS17240 0.73 -1.2 4,305,747 + CA265_RS17240 0.73 +1.0 4,305,792 + CA265_RS17240 0.75 +1.8 4,305,793 - CA265_RS17240 0.75 +0.8 4,305,808 + CA265_RS17240 0.76 +0.7 4,305,865 + CA265_RS17240 0.78 -2.4 4,306,007 + CA265_RS17240 0.84 +0.0 4,306,038 + CA265_RS17240 0.86 -0.0 4,306,138 + -0.6 4,306,139 - -0.2 4,306,192 + -0.4 4,306,218 - -0.7 4,306,350 + +0.6 4,306,350 + +0.1 4,306,351 - +0.8 4,306,351 - +1.2 4,306,354 + -0.1 4,306,380 + -2.7 4,306,472 + +0.6 4,306,473 - -1.1 4,306,524 + -0.5 4,306,581 - +1.4 4,306,658 + CA265_RS17245 0.16 -1.4 4,306,757 + CA265_RS17245 0.24 +1.5 4,306,757 + CA265_RS17245 0.24 +0.4 4,306,757 + CA265_RS17245 0.24 +0.1 4,306,767 + CA265_RS17245 0.25 +0.7 4,306,834 + CA265_RS17245 0.31 +1.1 4,306,837 + CA265_RS17245 0.31 +0.3 4,306,838 - CA265_RS17245 0.31 +1.4 4,306,872 + CA265_RS17245 0.34 +2.7 4,306,952 + CA265_RS17245 0.40 -0.3 4,306,998 - CA265_RS17245 0.44 +1.0 4,307,125 + CA265_RS17245 0.55 -0.3 4,307,231 - CA265_RS17245 0.64 -0.4 4,307,269 + CA265_RS17245 0.67 +0.4 4,307,269 + CA265_RS17245 0.67 -3.4 4,307,270 + CA265_RS17245 0.67 +0.4 4,307,276 - CA265_RS17245 0.67 +0.1 4,307,280 - CA265_RS17245 0.68 -0.5 4,307,347 + CA265_RS17245 0.73 +0.1 4,307,370 - CA265_RS17245 0.75 -1.1 4,307,370 - CA265_RS17245 0.75 -1.8
Or see this region's nucleotide sequence