Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13630

Experiment: R2A with copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with copper (II) chloride 0.16 mM
3,404,879	+		CA265_RS13625	0.28	+0.7
3,404,904	-		CA265_RS13625	0.31	+1.1
3,404,995	+		CA265_RS13625	0.41	+0.2
3,405,044	+		CA265_RS13625	0.47	+0.6
3,405,076	+		CA265_RS13625	0.51	+0.8
3,405,104	+		CA265_RS13625	0.54	+0.5
3,405,220	+		CA265_RS13625	0.67	-0.2
3,405,229	+		CA265_RS13625	0.68	-0.9
3,405,230	-		CA265_RS13625	0.68	-0.4
3,405,344	-		CA265_RS13625	0.82	-1.8
3,405,365	-		CA265_RS13625	0.84	+1.0
3,405,443	-				+0.2
3,405,443	-				-2.0
3,405,449	+				-0.3
3,405,450	-				+1.3
3,405,487	+				+1.3
3,405,506	-				+0.5
3,405,616	-				-0.2
3,405,628	-				-0.3
3,405,709	+				-1.0
3,405,871	+				+0.9
3,405,871	+				+0.8
3,405,872	-				-1.4
3,405,875	-				+0.4
3,406,045	-				-1.2
3,406,096	+		CA265_RS13630	0.11	-0.0
3,406,097	-		CA265_RS13630	0.11	+1.1
3,406,111	-		CA265_RS13630	0.12	+0.1
3,406,165	+		CA265_RS13630	0.13	-1.5
3,406,201	+		CA265_RS13630	0.14	+0.5
3,406,201	+		CA265_RS13630	0.14	-1.0
3,406,202	-		CA265_RS13630	0.14	+1.7
3,406,219	-		CA265_RS13630	0.15	-0.7
3,406,265	+		CA265_RS13630	0.16	+1.4
3,406,266	-		CA265_RS13630	0.16	-1.2
3,406,266	-		CA265_RS13630	0.16	-3.2
3,406,267	+		CA265_RS13630	0.16	-0.2
3,406,267	+		CA265_RS13630	0.16	-0.1
3,406,268	-		CA265_RS13630	0.16	-0.6
3,406,277	-		CA265_RS13630	0.17	+1.5
3,406,365	+		CA265_RS13630	0.20	+1.0
3,406,366	-		CA265_RS13630	0.20	+0.3
3,406,366	-		CA265_RS13630	0.20	+0.9
3,406,366	-		CA265_RS13630	0.20	-2.1
3,406,366	-		CA265_RS13630	0.20	+0.2
3,406,398	+		CA265_RS13630	0.21	-0.4
3,406,399	-		CA265_RS13630	0.21	-0.9
3,406,408	+		CA265_RS13630	0.21	-0.2
3,406,498	+		CA265_RS13630	0.24	-0.1
3,406,498	+		CA265_RS13630	0.24	+1.4
3,406,498	+		CA265_RS13630	0.24	-2.2
3,406,498	+		CA265_RS13630	0.24	+0.8
3,406,499	-		CA265_RS13630	0.24	+1.1
3,406,574	+		CA265_RS13630	0.26	-0.4
3,406,574	+		CA265_RS13630	0.26	-1.8
3,406,575	-		CA265_RS13630	0.26	-1.3
3,406,585	+		CA265_RS13630	0.26	+0.2
3,406,598	-		CA265_RS13630	0.27	-1.0
3,406,598	-		CA265_RS13630	0.27	+0.1
3,406,598	-		CA265_RS13630	0.27	+0.1
3,406,609	+		CA265_RS13630	0.27	-0.7
3,406,610	-		CA265_RS13630	0.27	+0.3
3,406,648	+		CA265_RS13630	0.28	+0.5
3,406,690	-		CA265_RS13630	0.30	-0.1
3,406,729	-		CA265_RS13630	0.31	-1.3
3,406,739	+		CA265_RS13630	0.31	-0.7
3,406,740	-		CA265_RS13630	0.31	+0.2
3,406,750	+		CA265_RS13630	0.32	+0.2
3,406,797	+		CA265_RS13630	0.33	+0.3
3,406,811	+		CA265_RS13630	0.34	-0.6
3,406,812	-		CA265_RS13630	0.34	+0.2
3,406,819	-		CA265_RS13630	0.34	-0.1
3,406,872	+		CA265_RS13630	0.36	+1.1
3,406,872	+		CA265_RS13630	0.36	+0.8
3,406,873	-		CA265_RS13630	0.36	+0.9
3,406,894	+		CA265_RS13630	0.36	+0.3
3,406,894	+		CA265_RS13630	0.36	+0.3
3,406,894	+		CA265_RS13630	0.36	-3.2
3,406,894	+		CA265_RS13630	0.36	+0.5
3,406,894	+		CA265_RS13630	0.36	-3.7
3,406,895	-		CA265_RS13630	0.36	-0.9
3,406,895	-		CA265_RS13630	0.36	-0.3
3,406,970	+		CA265_RS13630	0.39	-0.7
3,406,971	-		CA265_RS13630	0.39	-1.7
3,406,992	-		CA265_RS13630	0.39	+0.6
3,407,022	+		CA265_RS13630	0.40	-0.2
3,407,048	+		CA265_RS13630	0.41	+0.1
3,407,048	+		CA265_RS13630	0.41	+0.7
3,407,049	-		CA265_RS13630	0.41	-0.2
3,407,050	+		CA265_RS13630	0.41	+1.0
3,407,106	+		CA265_RS13630	0.43	-1.5
3,407,125	-		CA265_RS13630	0.44	-1.0
3,407,143	+		CA265_RS13630	0.44	+1.7
3,407,144	-		CA265_RS13630	0.44	+0.0
3,407,146	+		CA265_RS13630	0.44	-0.1
3,407,146	+		CA265_RS13630	0.44	-0.0
3,407,147	-		CA265_RS13630	0.44	+1.9
3,407,217	-		CA265_RS13630	0.46	-0.0
3,407,217	-		CA265_RS13630	0.46	+0.7
3,407,231	+		CA265_RS13630	0.47	-2.2
3,407,362	-		CA265_RS13630	0.51	-3.0
3,407,365	+		CA265_RS13630	0.51	-0.2
3,407,371	+		CA265_RS13630	0.51	+0.2
3,407,372	-		CA265_RS13630	0.51	+0.3
3,407,375	+				+1.4
3,407,443	+		CA265_RS13630	0.54	+0.1
3,407,485	-		CA265_RS13630	0.55	-0.5
3,407,490	+		CA265_RS13630	0.55	+0.6
3,407,511	+		CA265_RS13630	0.56	-0.2
3,407,534	+		CA265_RS13630	0.56	+1.0
3,407,535	-		CA265_RS13630	0.56	+0.2
3,407,543	-		CA265_RS13630	0.57	+0.2
3,407,552	+		CA265_RS13630	0.57	+1.2
3,407,681	-		CA265_RS13630	0.61	+1.0
3,407,769	+		CA265_RS13630	0.64	-0.6
3,407,770	-		CA265_RS13630	0.64	+0.1
3,407,784	+		CA265_RS13630	0.64	-0.5
3,407,784	+		CA265_RS13630	0.64	+0.1
3,407,788	+		CA265_RS13630	0.64	-0.4
3,407,788	+		CA265_RS13630	0.64	+2.0
3,407,789	-		CA265_RS13630	0.64	-0.6
3,407,798	-		CA265_RS13630	0.65	-0.1
3,407,858	+		CA265_RS13630	0.67	+0.4
3,407,922	+		CA265_RS13630	0.69	+0.7
3,407,955	-		CA265_RS13630	0.70	+0.7
3,407,957	-		CA265_RS13630	0.70	+1.2
3,407,982	+		CA265_RS13630	0.71	+0.5
3,407,992	+		CA265_RS13630	0.71	+1.0
3,407,998	-		CA265_RS13630	0.71	+0.8
3,407,998	-		CA265_RS13630	0.71	-0.3
3,408,081	-		CA265_RS13630	0.74	+0.6
3,408,130	+		CA265_RS13630	0.75	+0.7
3,408,135	-		CA265_RS13630	0.75	+1.5
3,408,151	-		CA265_RS13630	0.76	+0.0
3,408,157	+		CA265_RS13630	0.76	+0.4
3,408,169	+		CA265_RS13630	0.76	+0.4
3,408,186	+		CA265_RS13630	0.77	-0.4
3,408,234	+		CA265_RS13630	0.79	-0.4
3,408,303	-		CA265_RS13630	0.81	+0.6
3,408,303	-		CA265_RS13630	0.81	+0.4
3,408,303	-		CA265_RS13630	0.81	+0.7
3,408,316	+		CA265_RS13630	0.81	+0.1
3,408,320	-		CA265_RS13630	0.81	+1.2
3,408,320	-		CA265_RS13630	0.81	+1.1
3,408,370	-		CA265_RS13630	0.83	-0.2
3,408,370	-		CA265_RS13630	0.83	+0.1
3,408,370	-		CA265_RS13630	0.83	+0.5
3,408,385	+		CA265_RS13630	0.83	-1.7
3,408,547	-		CA265_RS13630	0.88	-0.1
3,408,624	-				-0.4
3,408,736	+				+0.5
3,408,789	-				-0.7
3,408,883	-				+0.3
3,408,884	+				-1.5
3,408,884	+				+0.5
3,408,885	-				+0.8
3,408,885	-				-2.7
3,408,885	-				+0.2
3,408,886	+				-0.2
3,408,887	-				-1.3
3,408,887	-				-0.1
3,408,984	+				+0.8
3,408,994	+				-0.4
3,408,999	+				-1.2
3,409,002	+				-0.5
3,409,053	+				-0.2
3,409,053	+				+0.6
3,409,063	-				-0.1
3,409,101	-				+0.2
3,409,101	-				+0.3
3,409,108	+				+0.1
3,409,122	-				-0.1
3,409,126	-				+0.5
3,409,126	-				+1.3
3,409,204	+		CA265_RS13635	0.14	+1.8
3,409,205	-		CA265_RS13635	0.14	-0.1
3,409,223	-		CA265_RS13635	0.15	+0.9
3,409,225	-		CA265_RS13635	0.15	+0.9
3,409,349	-		CA265_RS13635	0.21	+1.0
3,409,351	-		CA265_RS13635	0.21	+0.1
3,409,354	+		CA265_RS13635	0.22	-1.2
3,409,355	-		CA265_RS13635	0.22	-0.8
3,409,356	+		CA265_RS13635	0.22	-0.1
3,409,369	+				-0.2
3,409,370	-		CA265_RS13635	0.22	+0.2
3,409,422	+		CA265_RS13635	0.25	-0.5
3,409,422	+		CA265_RS13635	0.25	-0.2
3,409,422	+		CA265_RS13635	0.25	-1.7
3,409,467	+		CA265_RS13635	0.27	+0.7
3,409,533	+		CA265_RS13635	0.31	-2.4
3,409,534	-		CA265_RS13635	0.31	+0.6
3,409,540	-		CA265_RS13635	0.31	+1.0
3,409,616	-		CA265_RS13635	0.35	-1.5
3,409,669	+		CA265_RS13635	0.38	+0.0
3,409,696	+		CA265_RS13635	0.39	-0.1
3,409,714	-		CA265_RS13635	0.40	-0.7
3,409,771	+		CA265_RS13635	0.43	-1.9
3,409,772	-		CA265_RS13635	0.43	+2.3
3,409,800	+		CA265_RS13635	0.45	-1.9
3,409,806	+		CA265_RS13635	0.45	+0.2
3,409,807	-		CA265_RS13635	0.45	+0.2
3,409,831	+		CA265_RS13635	0.46	-0.6
3,409,832	-		CA265_RS13635	0.47	+0.3
3,409,832	-		CA265_RS13635	0.47	-0.8
3,409,833	+		CA265_RS13635	0.47	+0.9