Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06915

Experiment: R2A with copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS06905 and CA265_RS06910 are separated by 103 nucleotidesCA265_RS06910 and CA265_RS06915 are separated by 10 nucleotidesCA265_RS06915 and CA265_RS06920 are separated by 48 nucleotidesCA265_RS06920 and CA265_RS06925 are separated by 133 nucleotidesCA265_RS06925 and CA265_RS06930 are separated by 46 nucleotides CA265_RS06905: CA265_RS06905 - hypothetical protein, at 1,716,723 to 1,717,934 _RS06905 CA265_RS06910: CA265_RS06910 - DUF3606 domain-containing protein, at 1,718,038 to 1,718,214 _RS06910 CA265_RS06915: CA265_RS06915 - DNA ligase D, at 1,718,225 to 1,720,921 _RS06915 CA265_RS06920: CA265_RS06920 - transcription-repair coupling factor, at 1,720,970 to 1,721,266 _RS06920 CA265_RS06925: CA265_RS06925 - hypothetical protein, at 1,721,400 to 1,721,720 _RS06925 CA265_RS06930: CA265_RS06930 - hypothetical protein, at 1,721,767 to 1,722,021 _RS06930 Position (kb) 1718 1719 1720 1721Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1717.266 kb on - strand, within CA265_RS06905at 1717.279 kb on + strand, within CA265_RS06905at 1717.346 kb on - strand, within CA265_RS06905at 1717.397 kb on + strand, within CA265_RS06905at 1717.436 kb on + strand, within CA265_RS06905at 1717.437 kb on - strand, within CA265_RS06905at 1717.457 kb on - strand, within CA265_RS06905at 1717.460 kb on + strand, within CA265_RS06905at 1717.460 kb on + strand, within CA265_RS06905at 1717.461 kb on - strand, within CA265_RS06905at 1717.544 kb on - strand, within CA265_RS06905at 1717.547 kb on + strand, within CA265_RS06905at 1717.548 kb on - strand, within CA265_RS06905at 1717.548 kb on - strand, within CA265_RS06905at 1717.548 kb on - strand, within CA265_RS06905at 1717.548 kb on - strand, within CA265_RS06905at 1717.678 kb on + strand, within CA265_RS06905at 1717.679 kb on - strand, within CA265_RS06905at 1717.696 kb on - strand, within CA265_RS06905at 1717.712 kb on + strand, within CA265_RS06905at 1717.859 kb on + strandat 1717.860 kb on - strandat 1717.962 kb on + strandat 1718.036 kb on + strandat 1718.049 kb on + strandat 1718.101 kb on + strand, within CA265_RS06910at 1718.113 kb on + strand, within CA265_RS06910at 1718.114 kb on - strand, within CA265_RS06910at 1718.382 kb on + strandat 1718.468 kb on + strandat 1718.470 kb on + strandat 1718.488 kb on + strandat 1718.544 kb on - strand, within CA265_RS06915at 1718.544 kb on - strand, within CA265_RS06915at 1718.544 kb on - strand, within CA265_RS06915at 1718.592 kb on + strand, within CA265_RS06915at 1718.713 kb on + strand, within CA265_RS06915at 1718.713 kb on + strand, within CA265_RS06915at 1718.724 kb on - strand, within CA265_RS06915at 1718.724 kb on - strand, within CA265_RS06915at 1718.733 kb on + strand, within CA265_RS06915at 1718.733 kb on + strand, within CA265_RS06915at 1718.755 kb on + strand, within CA265_RS06915at 1718.756 kb on - strand, within CA265_RS06915at 1718.911 kb on - strand, within CA265_RS06915at 1718.965 kb on - strand, within CA265_RS06915at 1719.097 kb on + strand, within CA265_RS06915at 1719.281 kb on + strand, within CA265_RS06915at 1719.443 kb on - strand, within CA265_RS06915at 1719.460 kb on + strand, within CA265_RS06915at 1719.464 kb on - strand, within CA265_RS06915at 1719.464 kb on - strand, within CA265_RS06915at 1719.468 kb on - strand, within CA265_RS06915at 1719.511 kb on - strand, within CA265_RS06915at 1719.582 kb on + strand, within CA265_RS06915at 1719.586 kb on - strand, within CA265_RS06915at 1719.617 kb on + strand, within CA265_RS06915at 1719.618 kb on - strand, within CA265_RS06915at 1719.630 kb on + strand, within CA265_RS06915at 1719.688 kb on + strand, within CA265_RS06915at 1719.726 kb on + strand, within CA265_RS06915at 1719.726 kb on + strand, within CA265_RS06915at 1719.727 kb on - strand, within CA265_RS06915at 1719.811 kb on + strand, within CA265_RS06915at 1719.891 kb on + strand, within CA265_RS06915at 1719.911 kb on - strand, within CA265_RS06915at 1719.934 kb on + strand, within CA265_RS06915at 1719.934 kb on + strand, within CA265_RS06915at 1719.979 kb on + strand, within CA265_RS06915at 1720.063 kb on - strand, within CA265_RS06915at 1720.071 kb on + strand, within CA265_RS06915at 1720.071 kb on + strand, within CA265_RS06915at 1720.071 kb on + strand, within CA265_RS06915at 1720.121 kb on + strand, within CA265_RS06915at 1720.139 kb on - strand, within CA265_RS06915at 1720.139 kb on - strand, within CA265_RS06915at 1720.140 kb on + strand, within CA265_RS06915at 1720.140 kb on + strand, within CA265_RS06915at 1720.292 kb on + strand, within CA265_RS06915at 1720.321 kb on - strand, within CA265_RS06915at 1720.375 kb on - strand, within CA265_RS06915at 1720.414 kb on - strand, within CA265_RS06915at 1720.430 kb on - strand, within CA265_RS06915at 1720.545 kb on + strand, within CA265_RS06915at 1720.546 kb on - strand, within CA265_RS06915at 1720.556 kb on + strand, within CA265_RS06915at 1720.559 kb on - strand, within CA265_RS06915at 1720.563 kb on - strand, within CA265_RS06915at 1720.625 kb on + strand, within CA265_RS06915at 1720.625 kb on + strand, within CA265_RS06915at 1720.626 kb on - strand, within CA265_RS06915at 1720.690 kb on + strandat 1720.691 kb on - strandat 1720.777 kb on + strandat 1720.778 kb on - strandat 1720.813 kb on + strandat 1720.860 kb on + strandat 1720.927 kb on - strandat 1720.949 kb on - strandat 1720.949 kb on - strandat 1720.949 kb on - strandat 1721.042 kb on - strand, within CA265_RS06920at 1721.046 kb on + strand, within CA265_RS06920at 1721.047 kb on - strand, within CA265_RS06920at 1721.047 kb on - strand, within CA265_RS06920at 1721.047 kb on - strand, within CA265_RS06920at 1721.121 kb on + strand, within CA265_RS06920at 1721.125 kb on + strand, within CA265_RS06920at 1721.126 kb on - strand, within CA265_RS06920at 1721.126 kb on - strand, within CA265_RS06920at 1721.133 kb on - strand, within CA265_RS06920at 1721.134 kb on + strand, within CA265_RS06920at 1721.183 kb on + strand, within CA265_RS06920at 1721.183 kb on + strand, within CA265_RS06920at 1721.183 kb on + strand, within CA265_RS06920at 1721.203 kb on + strand, within CA265_RS06920at 1721.204 kb on - strand, within CA265_RS06920at 1721.252 kb on + strandat 1721.275 kb on - strandat 1721.318 kb on - strandat 1721.383 kb on + strandat 1721.386 kb on + strandat 1721.416 kb on + strandat 1721.435 kb on + strand, within CA265_RS06925at 1721.436 kb on - strand, within CA265_RS06925at 1721.471 kb on - strand, within CA265_RS06925at 1721.471 kb on - strand, within CA265_RS06925at 1721.474 kb on + strand, within CA265_RS06925at 1721.530 kb on - strand, within CA265_RS06925at 1721.672 kb on - strand, within CA265_RS06925at 1721.701 kb on - strandat 1721.713 kb on - strandat 1721.754 kb on + strandat 1721.761 kb on + strandat 1721.843 kb on + strand, within CA265_RS06930at 1721.847 kb on + strand, within CA265_RS06930at 1721.848 kb on - strand, within CA265_RS06930at 1721.880 kb on + strand, within CA265_RS06930at 1721.904 kb on - strand, within CA265_RS06930

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM
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1,717,266 - CA265_RS06905 0.45 +1.2
1,717,279 + CA265_RS06905 0.46 -2.3
1,717,346 - CA265_RS06905 0.51 +0.6
1,717,397 + CA265_RS06905 0.56 -0.0
1,717,436 + CA265_RS06905 0.59 +0.5
1,717,437 - CA265_RS06905 0.59 +0.1
1,717,457 - CA265_RS06905 0.61 +1.9
1,717,460 + CA265_RS06905 0.61 -0.3
1,717,460 + CA265_RS06905 0.61 -0.0
1,717,461 - CA265_RS06905 0.61 +1.3
1,717,544 - CA265_RS06905 0.68 -0.6
1,717,547 + CA265_RS06905 0.68 -0.4
1,717,548 - CA265_RS06905 0.68 +0.1
1,717,548 - CA265_RS06905 0.68 +0.8
1,717,548 - CA265_RS06905 0.68 +0.2
1,717,548 - CA265_RS06905 0.68 +0.5
1,717,678 + CA265_RS06905 0.79 -0.2
1,717,679 - CA265_RS06905 0.79 +0.9
1,717,696 - CA265_RS06905 0.80 +0.9
1,717,712 + CA265_RS06905 0.82 -2.5
1,717,859 + +0.2
1,717,860 - +0.2
1,717,962 + +1.7
1,718,036 + +1.1
1,718,049 + +0.0
1,718,101 + CA265_RS06910 0.36 -1.1
1,718,113 + CA265_RS06910 0.42 -0.8
1,718,114 - CA265_RS06910 0.43 +0.7
1,718,382 + -0.3
1,718,468 + -1.0
1,718,470 + +0.8
1,718,488 + -0.4
1,718,544 - CA265_RS06915 0.12 +1.3
1,718,544 - CA265_RS06915 0.12 +0.9
1,718,544 - CA265_RS06915 0.12 +0.1
1,718,592 + CA265_RS06915 0.14 +0.9
1,718,713 + CA265_RS06915 0.18 -0.1
1,718,713 + CA265_RS06915 0.18 +0.1
1,718,724 - CA265_RS06915 0.19 -0.8
1,718,724 - CA265_RS06915 0.19 +2.3
1,718,733 + CA265_RS06915 0.19 -1.9
1,718,733 + CA265_RS06915 0.19 -0.7
1,718,755 + CA265_RS06915 0.20 +2.5
1,718,756 - CA265_RS06915 0.20 +0.9
1,718,911 - CA265_RS06915 0.25 -3.9
1,718,965 - CA265_RS06915 0.27 -0.4
1,719,097 + CA265_RS06915 0.32 -0.1
1,719,281 + CA265_RS06915 0.39 -0.0
1,719,443 - CA265_RS06915 0.45 +0.0
1,719,460 + CA265_RS06915 0.46 -0.0
1,719,464 - CA265_RS06915 0.46 -0.1
1,719,464 - CA265_RS06915 0.46 +0.2
1,719,468 - CA265_RS06915 0.46 -0.6
1,719,511 - CA265_RS06915 0.48 -0.6
1,719,582 + CA265_RS06915 0.50 -0.0
1,719,586 - CA265_RS06915 0.50 +1.4
1,719,617 + CA265_RS06915 0.52 +0.2
1,719,618 - CA265_RS06915 0.52 +0.7
1,719,630 + CA265_RS06915 0.52 +1.2
1,719,688 + CA265_RS06915 0.54 +0.4
1,719,726 + CA265_RS06915 0.56 -0.4
1,719,726 + CA265_RS06915 0.56 +0.4
1,719,727 - CA265_RS06915 0.56 +0.7
1,719,811 + CA265_RS06915 0.59 -1.7
1,719,891 + CA265_RS06915 0.62 +2.5
1,719,911 - CA265_RS06915 0.63 +1.0
1,719,934 + CA265_RS06915 0.63 +0.2
1,719,934 + CA265_RS06915 0.63 -0.7
1,719,979 + CA265_RS06915 0.65 -0.2
1,720,063 - CA265_RS06915 0.68 -1.3
1,720,071 + CA265_RS06915 0.68 -1.7
1,720,071 + CA265_RS06915 0.68 -0.6
1,720,071 + CA265_RS06915 0.68 -0.5
1,720,121 + CA265_RS06915 0.70 +0.0
1,720,139 - CA265_RS06915 0.71 +1.3
1,720,139 - CA265_RS06915 0.71 +0.9
1,720,140 + CA265_RS06915 0.71 -2.6
1,720,140 + CA265_RS06915 0.71 +0.1
1,720,292 + CA265_RS06915 0.77 -0.1
1,720,321 - CA265_RS06915 0.78 +0.7
1,720,375 - CA265_RS06915 0.80 -0.3
1,720,414 - CA265_RS06915 0.81 +2.1
1,720,430 - CA265_RS06915 0.82 -0.2
1,720,545 + CA265_RS06915 0.86 -0.2
1,720,546 - CA265_RS06915 0.86 -1.2
1,720,556 + CA265_RS06915 0.86 -3.4
1,720,559 - CA265_RS06915 0.87 -2.6
1,720,563 - CA265_RS06915 0.87 +3.2
1,720,625 + CA265_RS06915 0.89 +0.7
1,720,625 + CA265_RS06915 0.89 -0.4
1,720,626 - CA265_RS06915 0.89 +1.1
1,720,690 + -0.2
1,720,691 - +0.1
1,720,777 + -2.7
1,720,778 - -1.2
1,720,813 + -1.4
1,720,860 + -1.4
1,720,927 - -2.0
1,720,949 - +0.2
1,720,949 - -0.1
1,720,949 - +0.3
1,721,042 - CA265_RS06920 0.24 -0.1
1,721,046 + CA265_RS06920 0.26 -0.8
1,721,047 - CA265_RS06920 0.26 +1.8
1,721,047 - CA265_RS06920 0.26 +0.2
1,721,047 - CA265_RS06920 0.26 +0.9
1,721,121 + CA265_RS06920 0.51 -1.0
1,721,125 + CA265_RS06920 0.52 -1.0
1,721,126 - CA265_RS06920 0.53 +0.0
1,721,126 - CA265_RS06920 0.53 +0.5
1,721,133 - CA265_RS06920 0.55 -1.2
1,721,134 + CA265_RS06920 0.55 +0.7
1,721,183 + CA265_RS06920 0.72 +0.4
1,721,183 + CA265_RS06920 0.72 -0.7
1,721,183 + CA265_RS06920 0.72 -0.6
1,721,203 + CA265_RS06920 0.78 -2.3
1,721,204 - CA265_RS06920 0.79 +1.5
1,721,252 + +0.9
1,721,275 - +0.7
1,721,318 - -0.2
1,721,383 + +0.4
1,721,386 + -0.0
1,721,416 + -0.5
1,721,435 + CA265_RS06925 0.11 -1.5
1,721,436 - CA265_RS06925 0.11 +0.6
1,721,471 - CA265_RS06925 0.22 -0.1
1,721,471 - CA265_RS06925 0.22 +0.5
1,721,474 + CA265_RS06925 0.23 -0.9
1,721,530 - CA265_RS06925 0.40 +0.2
1,721,672 - CA265_RS06925 0.85 -0.2
1,721,701 - -0.6
1,721,713 - +0.7
1,721,754 + +1.5
1,721,761 + +2.1
1,721,843 + CA265_RS06930 0.30 -2.3
1,721,847 + CA265_RS06930 0.31 +1.0
1,721,848 - CA265_RS06930 0.32 +1.1
1,721,880 + CA265_RS06930 0.44 -0.7
1,721,904 - CA265_RS06930 0.54 +0.3

Or see this region's nucleotide sequence