Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03965 and CA265_RS03970 are separated by 72 nucleotides CA265_RS03970 and CA265_RS03975 are separated by 30 nucleotides CA265_RS03975 and CA265_RS03980 are separated by 20 nucleotides
CA265_RS03965: CA265_RS03965 - hypothetical protein, at 945,485 to 947,026
_RS03965
CA265_RS03970: CA265_RS03970 - hypothetical protein, at 947,099 to 947,842
_RS03970
CA265_RS03975: CA265_RS03975 - hypothetical protein, at 947,873 to 949,546
_RS03975
CA265_RS03980: CA265_RS03980 - hypothetical protein, at 949,567 to 951,315
_RS03980
Position (kb) 947
948
949
950 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 946.918 kb on + strand at 946.970 kb on - strand at 946.998 kb on - strand at 947.025 kb on - strand at 947.027 kb on + strand at 947.079 kb on - strand at 947.079 kb on - strand at 947.091 kb on - strand at 947.093 kb on - strand at 947.093 kb on - strand at 947.093 kb on - strand at 947.113 kb on + strand at 947.140 kb on + strand at 947.164 kb on + strand at 947.171 kb on + strand at 947.205 kb on - strand, within CA265_RS03970 at 947.217 kb on + strand, within CA265_RS03970 at 947.218 kb on - strand, within CA265_RS03970 at 947.225 kb on + strand, within CA265_RS03970 at 947.225 kb on + strand, within CA265_RS03970 at 947.225 kb on + strand, within CA265_RS03970 at 947.225 kb on + strand, within CA265_RS03970 at 947.227 kb on + strand, within CA265_RS03970 at 947.273 kb on - strand, within CA265_RS03970 at 947.277 kb on + strand, within CA265_RS03970 at 947.345 kb on + strand, within CA265_RS03970 at 947.356 kb on + strand, within CA265_RS03970 at 947.371 kb on - strand, within CA265_RS03970 at 947.441 kb on - strand, within CA265_RS03970 at 947.442 kb on + strand, within CA265_RS03970 at 947.511 kb on - strand, within CA265_RS03970 at 947.543 kb on + strand, within CA265_RS03970 at 947.543 kb on + strand, within CA265_RS03970 at 947.590 kb on - strand, within CA265_RS03970 at 947.595 kb on - strand, within CA265_RS03970 at 947.661 kb on - strand, within CA265_RS03970 at 947.725 kb on - strand, within CA265_RS03970 at 947.725 kb on - strand, within CA265_RS03970 at 947.725 kb on - strand, within CA265_RS03970 at 947.790 kb on - strand at 947.841 kb on - strand at 947.841 kb on - strand at 947.849 kb on - strand at 948.010 kb on + strand at 948.095 kb on - strand, within CA265_RS03975 at 948.113 kb on + strand, within CA265_RS03975 at 948.113 kb on + strand, within CA265_RS03975 at 948.143 kb on - strand, within CA265_RS03975 at 948.187 kb on + strand, within CA265_RS03975 at 948.205 kb on + strand, within CA265_RS03975 at 948.205 kb on + strand, within CA265_RS03975 at 948.267 kb on + strand, within CA265_RS03975 at 948.267 kb on + strand, within CA265_RS03975 at 948.274 kb on - strand, within CA265_RS03975 at 948.281 kb on - strand, within CA265_RS03975 at 948.292 kb on - strand, within CA265_RS03975 at 948.333 kb on - strand, within CA265_RS03975 at 948.338 kb on - strand, within CA265_RS03975 at 948.340 kb on - strand, within CA265_RS03975 at 948.363 kb on - strand, within CA265_RS03975 at 948.369 kb on + strand, within CA265_RS03975 at 948.421 kb on - strand, within CA265_RS03975 at 948.438 kb on + strand, within CA265_RS03975 at 948.455 kb on + strand, within CA265_RS03975 at 948.456 kb on - strand, within CA265_RS03975 at 948.458 kb on - strand, within CA265_RS03975 at 948.506 kb on + strand, within CA265_RS03975 at 948.520 kb on + strand, within CA265_RS03975 at 948.539 kb on - strand, within CA265_RS03975 at 948.568 kb on + strand, within CA265_RS03975 at 948.590 kb on - strand, within CA265_RS03975 at 948.613 kb on - strand, within CA265_RS03975 at 948.652 kb on + strand, within CA265_RS03975 at 948.673 kb on + strand, within CA265_RS03975 at 948.674 kb on - strand, within CA265_RS03975 at 948.674 kb on - strand, within CA265_RS03975 at 948.794 kb on - strand, within CA265_RS03975 at 948.794 kb on - strand, within CA265_RS03975 at 948.799 kb on + strand, within CA265_RS03975 at 948.799 kb on + strand, within CA265_RS03975 at 948.800 kb on - strand, within CA265_RS03975 at 948.803 kb on - strand, within CA265_RS03975 at 948.818 kb on + strand, within CA265_RS03975 at 948.889 kb on + strand, within CA265_RS03975 at 948.898 kb on + strand, within CA265_RS03975 at 948.899 kb on - strand, within CA265_RS03975 at 948.899 kb on - strand, within CA265_RS03975 at 948.920 kb on + strand, within CA265_RS03975 at 948.970 kb on - strand, within CA265_RS03975 at 948.976 kb on + strand, within CA265_RS03975 at 949.035 kb on + strand, within CA265_RS03975 at 949.036 kb on - strand, within CA265_RS03975 at 949.036 kb on - strand at 949.036 kb on - strand, within CA265_RS03975 at 949.066 kb on - strand, within CA265_RS03975 at 949.066 kb on - strand, within CA265_RS03975 at 949.077 kb on + strand, within CA265_RS03975 at 949.117 kb on + strand, within CA265_RS03975 at 949.117 kb on + strand, within CA265_RS03975 at 949.142 kb on - strand, within CA265_RS03975 at 949.142 kb on - strand, within CA265_RS03975 at 949.232 kb on - strand, within CA265_RS03975 at 949.241 kb on - strand, within CA265_RS03975 at 949.241 kb on - strand, within CA265_RS03975 at 949.273 kb on - strand, within CA265_RS03975 at 949.273 kb on - strand, within CA265_RS03975 at 949.277 kb on - strand, within CA265_RS03975 at 949.294 kb on + strand, within CA265_RS03975 at 949.365 kb on + strand, within CA265_RS03975 at 949.400 kb on - strand at 949.400 kb on - strand at 949.423 kb on + strand at 949.486 kb on + strand at 949.510 kb on - strand at 949.566 kb on - strand at 949.566 kb on - strand at 949.593 kb on - strand at 949.596 kb on + strand at 949.638 kb on + strand at 949.645 kb on - strand at 949.738 kb on + strand at 949.739 kb on - strand at 949.739 kb on - strand at 949.739 kb on - strand at 949.803 kb on + strand, within CA265_RS03980 at 949.820 kb on + strand, within CA265_RS03980 at 949.821 kb on - strand, within CA265_RS03980 at 949.825 kb on - strand, within CA265_RS03980 at 949.884 kb on + strand, within CA265_RS03980 at 949.884 kb on + strand, within CA265_RS03980 at 949.887 kb on + strand, within CA265_RS03980 at 949.887 kb on + strand, within CA265_RS03980 at 949.926 kb on + strand, within CA265_RS03980 at 950.111 kb on + strand, within CA265_RS03980 at 950.120 kb on + strand, within CA265_RS03980 at 950.121 kb on - strand, within CA265_RS03980 at 950.130 kb on + strand, within CA265_RS03980 at 950.213 kb on - strand, within CA265_RS03980 at 950.242 kb on + strand, within CA265_RS03980 at 950.242 kb on + strand, within CA265_RS03980 at 950.243 kb on - strand, within CA265_RS03980 at 950.268 kb on - strand, within CA265_RS03980 at 950.319 kb on + strand, within CA265_RS03980 at 950.319 kb on + strand, within CA265_RS03980 at 950.359 kb on - strand, within CA265_RS03980 at 950.386 kb on - strand, within CA265_RS03980 at 950.389 kb on + strand, within CA265_RS03980 at 950.389 kb on + strand, within CA265_RS03980 at 950.401 kb on + strand, within CA265_RS03980 at 950.492 kb on + strand, within CA265_RS03980 at 950.493 kb on - strand, within CA265_RS03980 at 950.529 kb on + strand, within CA265_RS03980 at 950.530 kb on - strand, within CA265_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 946,918 + -2.2 946,970 - +0.8 946,998 - -1.5 947,025 - +0.5 947,027 + -1.8 947,079 - +0.1 947,079 - -0.1 947,091 - -2.2 947,093 - +0.7 947,093 - -0.5 947,093 - +0.4 947,113 + -0.9 947,140 + -0.2 947,164 + -0.4 947,171 + -2.9 947,205 - CA265_RS03970 0.14 +0.4 947,217 + CA265_RS03970 0.16 -2.4 947,218 - CA265_RS03970 0.16 +0.3 947,225 + CA265_RS03970 0.17 +0.9 947,225 + CA265_RS03970 0.17 -1.5 947,225 + CA265_RS03970 0.17 +0.1 947,225 + CA265_RS03970 0.17 -1.7 947,227 + CA265_RS03970 0.17 +0.2 947,273 - CA265_RS03970 0.23 +0.5 947,277 + CA265_RS03970 0.24 -0.4 947,345 + CA265_RS03970 0.33 -0.8 947,356 + CA265_RS03970 0.35 -1.7 947,371 - CA265_RS03970 0.37 -1.7 947,441 - CA265_RS03970 0.46 -0.6 947,442 + CA265_RS03970 0.46 -0.6 947,511 - CA265_RS03970 0.55 +0.9 947,543 + CA265_RS03970 0.60 -0.9 947,543 + CA265_RS03970 0.60 -1.4 947,590 - CA265_RS03970 0.66 +0.4 947,595 - CA265_RS03970 0.67 +0.9 947,661 - CA265_RS03970 0.76 -2.4 947,725 - CA265_RS03970 0.84 -0.2 947,725 - CA265_RS03970 0.84 +0.5 947,725 - CA265_RS03970 0.84 -0.2 947,790 - +1.5 947,841 - -1.4 947,841 - -1.6 947,849 - -0.1 948,010 + +0.2 948,095 - CA265_RS03975 0.13 +1.5 948,113 + CA265_RS03975 0.14 -1.0 948,113 + CA265_RS03975 0.14 -0.1 948,143 - CA265_RS03975 0.16 +0.4 948,187 + CA265_RS03975 0.19 -2.5 948,205 + CA265_RS03975 0.20 -2.6 948,205 + CA265_RS03975 0.20 -0.5 948,267 + CA265_RS03975 0.24 -2.0 948,267 + CA265_RS03975 0.24 +0.5 948,274 - CA265_RS03975 0.24 +0.0 948,281 - CA265_RS03975 0.24 +2.1 948,292 - CA265_RS03975 0.25 -0.3 948,333 - CA265_RS03975 0.27 +0.2 948,338 - CA265_RS03975 0.28 +1.3 948,340 - CA265_RS03975 0.28 +1.7 948,363 - CA265_RS03975 0.29 +1.2 948,369 + CA265_RS03975 0.30 -3.2 948,421 - CA265_RS03975 0.33 +0.7 948,438 + CA265_RS03975 0.34 -1.8 948,455 + CA265_RS03975 0.35 +1.3 948,456 - CA265_RS03975 0.35 -3.7 948,458 - CA265_RS03975 0.35 +0.9 948,506 + CA265_RS03975 0.38 -1.1 948,520 + CA265_RS03975 0.39 -1.2 948,539 - CA265_RS03975 0.40 -1.6 948,568 + CA265_RS03975 0.42 -0.9 948,590 - CA265_RS03975 0.43 -0.3 948,613 - CA265_RS03975 0.44 +0.8 948,652 + CA265_RS03975 0.47 -4.3 948,673 + CA265_RS03975 0.48 -4.7 948,674 - CA265_RS03975 0.48 +0.1 948,674 - CA265_RS03975 0.48 -0.1 948,794 - CA265_RS03975 0.55 -0.9 948,794 - CA265_RS03975 0.55 +0.3 948,799 + CA265_RS03975 0.55 -0.1 948,799 + CA265_RS03975 0.55 -2.2 948,800 - CA265_RS03975 0.55 +0.6 948,803 - CA265_RS03975 0.56 +0.5 948,818 + CA265_RS03975 0.56 +0.2 948,889 + CA265_RS03975 0.61 +0.1 948,898 + CA265_RS03975 0.61 +0.1 948,899 - CA265_RS03975 0.61 +0.9 948,899 - CA265_RS03975 0.61 +0.5 948,920 + CA265_RS03975 0.63 -0.4 948,970 - CA265_RS03975 0.66 +0.7 948,976 + CA265_RS03975 0.66 -1.7 949,035 + CA265_RS03975 0.69 -1.5 949,036 - CA265_RS03975 0.69 -1.3 949,036 - -0.2 949,036 - CA265_RS03975 0.69 +0.2 949,066 - CA265_RS03975 0.71 -0.0 949,066 - CA265_RS03975 0.71 -0.3 949,077 + CA265_RS03975 0.72 -2.0 949,117 + CA265_RS03975 0.74 -0.5 949,117 + CA265_RS03975 0.74 -1.2 949,142 - CA265_RS03975 0.76 +0.4 949,142 - CA265_RS03975 0.76 +0.5 949,232 - CA265_RS03975 0.81 +0.5 949,241 - CA265_RS03975 0.82 +1.3 949,241 - CA265_RS03975 0.82 -1.5 949,273 - CA265_RS03975 0.84 -0.6 949,273 - CA265_RS03975 0.84 +1.5 949,277 - CA265_RS03975 0.84 -2.1 949,294 + CA265_RS03975 0.85 -0.6 949,365 + CA265_RS03975 0.89 +0.9 949,400 - -0.2 949,400 - +0.2 949,423 + -0.7 949,486 + -0.3 949,510 - +0.5 949,566 - +0.1 949,566 - -0.4 949,593 - +1.2 949,596 + -1.4 949,638 + -2.5 949,645 - +0.1 949,738 + -1.7 949,739 - -0.1 949,739 - -0.7 949,739 - -0.2 949,803 + CA265_RS03980 0.13 -2.7 949,820 + CA265_RS03980 0.14 -0.6 949,821 - CA265_RS03980 0.15 +0.5 949,825 - CA265_RS03980 0.15 +1.3 949,884 + CA265_RS03980 0.18 -0.7 949,884 + CA265_RS03980 0.18 -1.7 949,887 + CA265_RS03980 0.18 +1.1 949,887 + CA265_RS03980 0.18 -0.4 949,926 + CA265_RS03980 0.21 +0.2 950,111 + CA265_RS03980 0.31 +0.8 950,120 + CA265_RS03980 0.32 -0.2 950,121 - CA265_RS03980 0.32 +0.9 950,130 + CA265_RS03980 0.32 +0.3 950,213 - CA265_RS03980 0.37 +0.7 950,242 + CA265_RS03980 0.39 +0.2 950,242 + CA265_RS03980 0.39 -0.3 950,243 - CA265_RS03980 0.39 -0.5 950,268 - CA265_RS03980 0.40 +0.9 950,319 + CA265_RS03980 0.43 -1.7 950,319 + CA265_RS03980 0.43 -1.1 950,359 - CA265_RS03980 0.45 -1.2 950,386 - CA265_RS03980 0.47 -0.4 950,389 + CA265_RS03980 0.47 -0.3 950,389 + CA265_RS03980 0.47 +0.3 950,401 + CA265_RS03980 0.48 -0.7 950,492 + CA265_RS03980 0.53 +1.0 950,493 - CA265_RS03980 0.53 +0.3 950,529 + CA265_RS03980 0.55 -0.6 950,530 - CA265_RS03980 0.55 -2.9
Or see this region's nucleotide sequence