Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03670 and CA265_RS03675 are separated by 25 nucleotides CA265_RS03675 and CA265_RS03680 overlap by 11 nucleotides CA265_RS03680 and CA265_RS03685 are separated by 2 nucleotides CA265_RS03685 and CA265_RS03690 are separated by 24 nucleotides
CA265_RS03670: CA265_RS03670 - O-acetyl-ADP-ribose deacetylase, at 875,495 to 876,016
_RS03670
CA265_RS03675: CA265_RS03675 - hypothetical protein, at 876,042 to 876,695
_RS03675
CA265_RS03680: CA265_RS03680 - RNA 2'-phosphotransferase, at 876,685 to 877,227
_RS03680
CA265_RS03685: CA265_RS03685 - serine/threonine protein phosphatase, at 877,230 to 877,961
_RS03685
CA265_RS03690: CA265_RS03690 - nicotinate phosphoribosyltransferase, at 877,986 to 879,443
_RS03690
Position (kb) 876
877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 875.718 kb on - strand, within CA265_RS03670 at 875.864 kb on + strand, within CA265_RS03670 at 875.882 kb on - strand, within CA265_RS03670 at 875.882 kb on - strand, within CA265_RS03670 at 875.883 kb on + strand, within CA265_RS03670 at 875.884 kb on - strand, within CA265_RS03670 at 875.893 kb on + strand, within CA265_RS03670 at 875.984 kb on + strand at 876.018 kb on - strand at 876.018 kb on - strand at 876.108 kb on - strand, within CA265_RS03675 at 876.304 kb on + strand, within CA265_RS03675 at 876.304 kb on + strand, within CA265_RS03675 at 876.305 kb on - strand, within CA265_RS03675 at 876.333 kb on + strand, within CA265_RS03675 at 876.500 kb on + strand, within CA265_RS03675 at 876.538 kb on + strand, within CA265_RS03675 at 876.607 kb on + strand, within CA265_RS03675 at 876.694 kb on - strand at 876.711 kb on + strand at 876.711 kb on + strand at 876.723 kb on - strand at 876.755 kb on + strand, within CA265_RS03680 at 876.854 kb on - strand, within CA265_RS03680 at 876.854 kb on - strand, within CA265_RS03680 at 876.933 kb on + strand, within CA265_RS03680 at 876.933 kb on + strand, within CA265_RS03680 at 876.933 kb on + strand, within CA265_RS03680 at 876.934 kb on - strand, within CA265_RS03680 at 876.971 kb on + strand, within CA265_RS03680 at 876.972 kb on - strand, within CA265_RS03680 at 876.982 kb on + strand, within CA265_RS03680 at 876.982 kb on + strand, within CA265_RS03680 at 877.015 kb on - strand, within CA265_RS03680 at 877.086 kb on + strand, within CA265_RS03680 at 877.099 kb on - strand, within CA265_RS03680 at 877.116 kb on + strand, within CA265_RS03680 at 877.118 kb on + strand, within CA265_RS03680 at 877.216 kb on - strand at 877.218 kb on - strand at 877.243 kb on + strand at 877.247 kb on - strand at 877.250 kb on - strand at 877.256 kb on + strand at 877.257 kb on - strand at 877.257 kb on - strand at 877.306 kb on + strand, within CA265_RS03685 at 877.341 kb on + strand, within CA265_RS03685 at 877.373 kb on - strand, within CA265_RS03685 at 877.467 kb on - strand, within CA265_RS03685 at 877.471 kb on + strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.508 kb on + strand, within CA265_RS03685 at 877.518 kb on + strand, within CA265_RS03685 at 877.656 kb on + strand, within CA265_RS03685 at 877.657 kb on - strand, within CA265_RS03685 at 877.669 kb on - strand, within CA265_RS03685 at 877.736 kb on - strand, within CA265_RS03685 at 877.801 kb on - strand, within CA265_RS03685 at 877.801 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.829 kb on + strand, within CA265_RS03685 at 877.830 kb on - strand, within CA265_RS03685 at 877.873 kb on + strand, within CA265_RS03685 at 877.922 kb on - strand at 877.974 kb on + strand at 877.980 kb on - strand at 877.999 kb on + strand at 877.999 kb on + strand at 878.020 kb on + strand at 878.021 kb on - strand at 878.048 kb on + strand at 878.101 kb on + strand at 878.150 kb on + strand, within CA265_RS03690 at 878.151 kb on - strand, within CA265_RS03690 at 878.162 kb on + strand, within CA265_RS03690
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 875,718 - CA265_RS03670 0.43 +0.7 875,864 + CA265_RS03670 0.71 -0.3 875,882 - CA265_RS03670 0.74 -0.3 875,882 - CA265_RS03670 0.74 -0.4 875,883 + CA265_RS03670 0.74 +0.1 875,884 - CA265_RS03670 0.75 -2.4 875,893 + CA265_RS03670 0.76 +0.2 875,984 + +0.5 876,018 - +0.5 876,018 - +0.7 876,108 - CA265_RS03675 0.10 -1.5 876,304 + CA265_RS03675 0.40 -0.0 876,304 + CA265_RS03675 0.40 +0.3 876,305 - CA265_RS03675 0.40 +0.1 876,333 + CA265_RS03675 0.44 -0.6 876,500 + CA265_RS03675 0.70 +1.4 876,538 + CA265_RS03675 0.76 +0.1 876,607 + CA265_RS03675 0.86 -0.9 876,694 - +1.8 876,711 + -0.9 876,711 + +0.7 876,723 - +0.7 876,755 + CA265_RS03680 0.13 +0.2 876,854 - CA265_RS03680 0.31 +0.9 876,854 - CA265_RS03680 0.31 -0.8 876,933 + CA265_RS03680 0.46 -3.0 876,933 + CA265_RS03680 0.46 -1.6 876,933 + CA265_RS03680 0.46 +0.0 876,934 - CA265_RS03680 0.46 -2.2 876,971 + CA265_RS03680 0.53 -0.6 876,972 - CA265_RS03680 0.53 +0.5 876,982 + CA265_RS03680 0.55 +0.2 876,982 + CA265_RS03680 0.55 -1.1 877,015 - CA265_RS03680 0.61 +0.0 877,086 + CA265_RS03680 0.74 +0.0 877,099 - CA265_RS03680 0.76 -1.0 877,116 + CA265_RS03680 0.79 +0.6 877,118 + CA265_RS03680 0.80 +1.0 877,216 - +1.1 877,218 - -0.6 877,243 + +0.3 877,247 - +0.7 877,250 - -2.8 877,256 + +0.2 877,257 - -3.7 877,257 - +0.5 877,306 + CA265_RS03685 0.10 -0.4 877,341 + CA265_RS03685 0.15 -1.6 877,373 - CA265_RS03685 0.20 +0.7 877,467 - CA265_RS03685 0.32 +2.6 877,471 + CA265_RS03685 0.33 -0.2 877,472 - CA265_RS03685 0.33 +0.6 877,472 - CA265_RS03685 0.33 +0.8 877,472 - CA265_RS03685 0.33 +0.4 877,508 + CA265_RS03685 0.38 -1.1 877,518 + CA265_RS03685 0.39 -0.5 877,656 + CA265_RS03685 0.58 -0.6 877,657 - CA265_RS03685 0.58 -2.3 877,669 - CA265_RS03685 0.60 -1.1 877,736 - CA265_RS03685 0.69 -1.3 877,801 - CA265_RS03685 0.78 -0.1 877,801 - CA265_RS03685 0.78 -1.5 877,803 - CA265_RS03685 0.78 -0.6 877,803 - CA265_RS03685 0.78 +0.7 877,803 - CA265_RS03685 0.78 +0.2 877,829 + CA265_RS03685 0.82 -2.2 877,830 - CA265_RS03685 0.82 -2.2 877,873 + CA265_RS03685 0.88 +0.3 877,922 - +0.1 877,974 + -0.6 877,980 - -1.6 877,999 + +0.3 877,999 + -1.0 878,020 + +0.1 878,021 - -1.6 878,048 + -0.2 878,101 + -1.3 878,150 + CA265_RS03690 0.11 -2.8 878,151 - CA265_RS03690 0.11 +0.4 878,162 + CA265_RS03690 0.12 -0.4
Or see this region's nucleotide sequence