Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01245 and CA265_RS01250 are separated by 6 nucleotides CA265_RS01250 and CA265_RS01255 are separated by 0 nucleotides CA265_RS01255 and CA265_RS01260 are separated by 152 nucleotides CA265_RS01260 and CA265_RS01265 are separated by 173 nucleotides
CA265_RS01245: CA265_RS01245 - hypothetical protein, at 308,921 to 310,324
_RS01245
CA265_RS01250: CA265_RS01250 - hypothetical protein, at 310,331 to 310,762
_RS01250
CA265_RS01255: CA265_RS01255 - hypothetical protein, at 310,763 to 311,734
_RS01255
CA265_RS01260: CA265_RS01260 - hypothetical protein, at 311,887 to 312,243
_RS01260
CA265_RS01265: CA265_RS01265 - GntR family transcriptional regulator, at 312,417 to 313,157
_RS01265
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.787 kb on + strand, within CA265_RS01245 at 310.029 kb on + strand, within CA265_RS01245 at 310.143 kb on + strand, within CA265_RS01245 at 310.144 kb on - strand, within CA265_RS01245 at 310.182 kb on + strand, within CA265_RS01245 at 310.209 kb on + strand at 310.209 kb on + strand at 310.303 kb on - strand at 310.303 kb on - strand at 310.311 kb on + strand at 310.322 kb on + strand at 310.323 kb on - strand at 310.356 kb on + strand at 310.357 kb on - strand at 310.357 kb on - strand at 310.357 kb on - strand at 310.357 kb on - strand at 310.362 kb on + strand at 310.363 kb on - strand at 310.425 kb on - strand, within CA265_RS01250 at 310.486 kb on - strand, within CA265_RS01250 at 310.490 kb on + strand, within CA265_RS01250 at 310.491 kb on - strand, within CA265_RS01250 at 310.491 kb on - strand, within CA265_RS01250 at 310.502 kb on - strand, within CA265_RS01250 at 310.515 kb on + strand, within CA265_RS01250 at 310.675 kb on - strand, within CA265_RS01250 at 310.681 kb on + strand, within CA265_RS01250 at 310.682 kb on - strand, within CA265_RS01250 at 310.850 kb on - strand at 310.887 kb on + strand, within CA265_RS01255 at 310.887 kb on + strand, within CA265_RS01255 at 310.887 kb on + strand, within CA265_RS01255 at 310.888 kb on - strand, within CA265_RS01255 at 310.888 kb on - strand, within CA265_RS01255 at 310.888 kb on - strand, within CA265_RS01255 at 310.928 kb on + strand, within CA265_RS01255 at 310.940 kb on - strand, within CA265_RS01255 at 310.949 kb on + strand, within CA265_RS01255 at 310.949 kb on + strand, within CA265_RS01255 at 310.972 kb on + strand, within CA265_RS01255 at 310.972 kb on + strand, within CA265_RS01255 at 311.007 kb on - strand, within CA265_RS01255 at 311.060 kb on - strand, within CA265_RS01255 at 311.137 kb on + strand, within CA265_RS01255 at 311.166 kb on - strand, within CA265_RS01255 at 311.180 kb on + strand, within CA265_RS01255 at 311.321 kb on + strand, within CA265_RS01255 at 311.366 kb on + strand, within CA265_RS01255 at 311.371 kb on + strand, within CA265_RS01255 at 311.400 kb on + strand, within CA265_RS01255 at 311.400 kb on + strand, within CA265_RS01255 at 311.400 kb on + strand, within CA265_RS01255 at 311.404 kb on - strand, within CA265_RS01255 at 311.425 kb on - strand, within CA265_RS01255 at 311.525 kb on - strand, within CA265_RS01255 at 311.621 kb on - strand, within CA265_RS01255 at 311.621 kb on - strand, within CA265_RS01255 at 311.622 kb on + strand, within CA265_RS01255 at 311.623 kb on - strand, within CA265_RS01255 at 311.672 kb on + strand at 311.673 kb on - strand at 311.676 kb on + strand at 311.677 kb on - strand at 311.684 kb on - strand at 311.687 kb on - strand at 311.738 kb on - strand at 311.815 kb on - strand at 311.881 kb on - strand at 312.016 kb on + strand, within CA265_RS01260 at 312.017 kb on - strand, within CA265_RS01260 at 312.049 kb on - strand, within CA265_RS01260 at 312.062 kb on + strand, within CA265_RS01260 at 312.063 kb on - strand, within CA265_RS01260 at 312.085 kb on - strand, within CA265_RS01260 at 312.195 kb on - strand, within CA265_RS01260 at 312.195 kb on - strand, within CA265_RS01260 at 312.197 kb on - strand, within CA265_RS01260 at 312.242 kb on - strand at 312.249 kb on + strand at 312.249 kb on + strand at 312.261 kb on + strand at 312.266 kb on - strand at 312.321 kb on - strand at 312.330 kb on - strand at 312.339 kb on - strand at 312.353 kb on - strand at 312.361 kb on + strand at 312.384 kb on - strand at 312.391 kb on + strand at 312.393 kb on + strand at 312.449 kb on + strand at 312.449 kb on + strand at 312.713 kb on + strand, within CA265_RS01265
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 309,787 + CA265_RS01245 0.62 -0.3 310,029 + CA265_RS01245 0.79 +0.5 310,143 + CA265_RS01245 0.87 -0.6 310,144 - CA265_RS01245 0.87 +0.6 310,182 + CA265_RS01245 0.90 -1.5 310,209 + -0.3 310,209 + +0.7 310,303 - +1.1 310,303 - +2.0 310,311 + -0.7 310,322 + +0.1 310,323 - +0.2 310,356 + +0.6 310,357 - +0.1 310,357 - +0.8 310,357 - -0.9 310,357 - -0.8 310,362 + -0.4 310,363 - -1.6 310,425 - CA265_RS01250 0.22 -0.1 310,486 - CA265_RS01250 0.36 +0.9 310,490 + CA265_RS01250 0.37 -3.0 310,491 - CA265_RS01250 0.37 -0.7 310,491 - CA265_RS01250 0.37 -0.6 310,502 - CA265_RS01250 0.40 -0.7 310,515 + CA265_RS01250 0.43 +0.2 310,675 - CA265_RS01250 0.80 -0.6 310,681 + CA265_RS01250 0.81 +0.0 310,682 - CA265_RS01250 0.81 -2.1 310,850 - +1.4 310,887 + CA265_RS01255 0.13 +0.6 310,887 + CA265_RS01255 0.13 +1.2 310,887 + CA265_RS01255 0.13 +0.6 310,888 - CA265_RS01255 0.13 +1.4 310,888 - CA265_RS01255 0.13 -0.3 310,888 - CA265_RS01255 0.13 +0.0 310,928 + CA265_RS01255 0.17 +0.5 310,940 - CA265_RS01255 0.18 +0.6 310,949 + CA265_RS01255 0.19 +0.1 310,949 + CA265_RS01255 0.19 -0.9 310,972 + CA265_RS01255 0.22 +0.5 310,972 + CA265_RS01255 0.22 +0.4 311,007 - CA265_RS01255 0.25 +0.5 311,060 - CA265_RS01255 0.31 +0.3 311,137 + CA265_RS01255 0.38 -0.0 311,166 - CA265_RS01255 0.41 +0.3 311,180 + CA265_RS01255 0.43 -1.0 311,321 + CA265_RS01255 0.57 +0.2 311,366 + CA265_RS01255 0.62 +1.0 311,371 + CA265_RS01255 0.63 -0.9 311,400 + CA265_RS01255 0.66 -0.6 311,400 + CA265_RS01255 0.66 +1.0 311,400 + CA265_RS01255 0.66 +0.3 311,404 - CA265_RS01255 0.66 -0.1 311,425 - CA265_RS01255 0.68 +0.9 311,525 - CA265_RS01255 0.78 -0.3 311,621 - CA265_RS01255 0.88 -3.4 311,621 - CA265_RS01255 0.88 +0.3 311,622 + CA265_RS01255 0.88 -0.6 311,623 - CA265_RS01255 0.88 +0.1 311,672 + +0.1 311,673 - +0.7 311,676 + -0.6 311,677 - +0.3 311,684 - -1.2 311,687 - +1.1 311,738 - +0.8 311,815 - -1.9 311,881 - +1.1 312,016 + CA265_RS01260 0.36 -2.6 312,017 - CA265_RS01260 0.36 +0.4 312,049 - CA265_RS01260 0.45 -0.4 312,062 + CA265_RS01260 0.49 -0.7 312,063 - CA265_RS01260 0.49 +0.4 312,085 - CA265_RS01260 0.55 -0.5 312,195 - CA265_RS01260 0.86 -0.4 312,195 - CA265_RS01260 0.86 -1.2 312,197 - CA265_RS01260 0.87 +0.9 312,242 - -0.9 312,249 + +1.2 312,249 + +0.1 312,261 + -2.6 312,266 - -2.6 312,321 - +0.7 312,330 - -1.5 312,339 - +0.6 312,353 - -3.6 312,361 + -2.9 312,384 - -0.7 312,391 + -1.4 312,393 + -2.4 312,449 + -0.9 312,449 + -0.4 312,713 + CA265_RS01265 0.40 -3.5
Or see this region's nucleotide sequence