Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01180 and CA265_RS01185 are separated by 135 nucleotides CA265_RS01185 and CA265_RS01190 are separated by 24 nucleotides CA265_RS01190 and CA265_RS01195 are separated by 18 nucleotides CA265_RS01195 and CA265_RS01200 are separated by 34 nucleotides
CA265_RS01180: CA265_RS01180 - riboflavin biosynthesis protein, at 297,334 to 297,930
_RS01180
CA265_RS01185: CA265_RS01185 - hypothetical protein, at 298,066 to 298,494
_RS01185
CA265_RS01190: CA265_RS01190 - hypothetical protein, at 298,519 to 298,962
_RS01190
CA265_RS01195: CA265_RS01195 - hypothetical protein, at 298,981 to 299,394
_RS01195
CA265_RS01200: CA265_RS01200 - hypothetical protein, at 299,429 to 299,950
_RS01200
Position (kb) 298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 297.561 kb on + strand, within CA265_RS01180 at 297.582 kb on + strand, within CA265_RS01180 at 297.619 kb on + strand, within CA265_RS01180 at 297.619 kb on + strand, within CA265_RS01180 at 297.624 kb on - strand, within CA265_RS01180 at 297.650 kb on - strand, within CA265_RS01180 at 297.702 kb on + strand, within CA265_RS01180 at 297.741 kb on + strand, within CA265_RS01180 at 297.742 kb on - strand, within CA265_RS01180 at 297.751 kb on - strand, within CA265_RS01180 at 297.752 kb on + strand, within CA265_RS01180 at 297.752 kb on + strand, within CA265_RS01180 at 297.753 kb on - strand, within CA265_RS01180 at 297.755 kb on + strand, within CA265_RS01180 at 297.756 kb on - strand, within CA265_RS01180 at 297.815 kb on + strand, within CA265_RS01180 at 297.815 kb on + strand, within CA265_RS01180 at 297.820 kb on - strand, within CA265_RS01180 at 297.895 kb on + strand at 297.906 kb on - strand at 297.906 kb on - strand at 297.907 kb on + strand at 297.907 kb on + strand at 297.908 kb on - strand at 297.949 kb on - strand at 298.057 kb on - strand at 298.081 kb on + strand at 298.081 kb on + strand at 298.085 kb on + strand at 298.085 kb on + strand at 298.086 kb on - strand at 298.230 kb on + strand, within CA265_RS01185 at 298.231 kb on - strand, within CA265_RS01185 at 298.271 kb on + strand, within CA265_RS01185 at 298.272 kb on - strand, within CA265_RS01185 at 298.272 kb on - strand, within CA265_RS01185 at 298.272 kb on - strand, within CA265_RS01185 at 298.407 kb on + strand, within CA265_RS01185 at 298.482 kb on + strand at 298.484 kb on + strand at 298.531 kb on - strand at 298.532 kb on + strand at 298.563 kb on + strand at 298.575 kb on + strand, within CA265_RS01190 at 298.583 kb on + strand, within CA265_RS01190 at 298.584 kb on - strand, within CA265_RS01190 at 298.632 kb on - strand, within CA265_RS01190 at 298.634 kb on + strand, within CA265_RS01190 at 298.664 kb on - strand, within CA265_RS01190 at 298.678 kb on - strand, within CA265_RS01190 at 298.691 kb on + strand, within CA265_RS01190 at 298.692 kb on - strand, within CA265_RS01190 at 298.721 kb on + strand, within CA265_RS01190 at 298.743 kb on - strand, within CA265_RS01190 at 298.767 kb on + strand, within CA265_RS01190 at 298.768 kb on - strand, within CA265_RS01190 at 298.768 kb on - strand, within CA265_RS01190 at 298.769 kb on + strand, within CA265_RS01190 at 298.769 kb on + strand, within CA265_RS01190 at 298.837 kb on - strand, within CA265_RS01190 at 298.867 kb on - strand, within CA265_RS01190 at 298.949 kb on - strand at 298.982 kb on + strand at 299.033 kb on - strand, within CA265_RS01195 at 299.045 kb on - strand, within CA265_RS01195 at 299.078 kb on + strand, within CA265_RS01195 at 299.078 kb on + strand, within CA265_RS01195 at 299.082 kb on + strand, within CA265_RS01195 at 299.107 kb on - strand, within CA265_RS01195 at 299.151 kb on + strand, within CA265_RS01195 at 299.152 kb on - strand, within CA265_RS01195 at 299.186 kb on + strand, within CA265_RS01195 at 299.186 kb on + strand, within CA265_RS01195 at 299.250 kb on + strand, within CA265_RS01195 at 299.281 kb on + strand, within CA265_RS01195 at 299.282 kb on - strand, within CA265_RS01195 at 299.282 kb on - strand, within CA265_RS01195 at 299.292 kb on + strand, within CA265_RS01195 at 299.368 kb on - strand at 299.378 kb on - strand at 299.406 kb on + strand at 299.407 kb on - strand at 299.427 kb on - strand at 299.431 kb on - strand at 299.441 kb on - strand at 299.499 kb on + strand, within CA265_RS01200 at 299.612 kb on + strand, within CA265_RS01200 at 299.619 kb on - strand, within CA265_RS01200 at 299.619 kb on - strand, within CA265_RS01200 at 299.698 kb on + strand, within CA265_RS01200 at 299.730 kb on - strand, within CA265_RS01200 at 299.754 kb on + strand at 299.755 kb on - strand, within CA265_RS01200 at 299.755 kb on - strand, within CA265_RS01200 at 299.757 kb on + strand, within CA265_RS01200 at 299.757 kb on + strand, within CA265_RS01200 at 299.758 kb on - strand, within CA265_RS01200 at 299.764 kb on + strand, within CA265_RS01200 at 299.795 kb on - strand, within CA265_RS01200 at 299.810 kb on - strand, within CA265_RS01200 at 299.876 kb on + strand, within CA265_RS01200 at 299.877 kb on - strand, within CA265_RS01200
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 297,561 + CA265_RS01180 0.38 +0.7 297,582 + CA265_RS01180 0.42 +1.2 297,619 + CA265_RS01180 0.48 -1.1 297,619 + CA265_RS01180 0.48 +0.3 297,624 - CA265_RS01180 0.49 +0.0 297,650 - CA265_RS01180 0.53 -0.7 297,702 + CA265_RS01180 0.62 +0.5 297,741 + CA265_RS01180 0.68 -0.7 297,742 - CA265_RS01180 0.68 +0.5 297,751 - CA265_RS01180 0.70 +1.1 297,752 + CA265_RS01180 0.70 -0.6 297,752 + CA265_RS01180 0.70 +0.3 297,753 - CA265_RS01180 0.70 +0.3 297,755 + CA265_RS01180 0.71 +0.2 297,756 - CA265_RS01180 0.71 +0.2 297,815 + CA265_RS01180 0.81 +0.4 297,815 + CA265_RS01180 0.81 -1.5 297,820 - CA265_RS01180 0.81 +1.1 297,895 + -1.2 297,906 - -0.9 297,906 - -0.0 297,907 + +0.7 297,907 + +0.9 297,908 - +0.7 297,949 - -0.0 298,057 - -0.4 298,081 + +0.3 298,081 + -0.1 298,085 + +0.1 298,085 + +0.7 298,086 - +0.8 298,230 + CA265_RS01185 0.38 -0.0 298,231 - CA265_RS01185 0.38 +0.8 298,271 + CA265_RS01185 0.48 -0.7 298,272 - CA265_RS01185 0.48 -0.5 298,272 - CA265_RS01185 0.48 +0.0 298,272 - CA265_RS01185 0.48 -0.1 298,407 + CA265_RS01185 0.79 -2.8 298,482 + +1.3 298,484 + +0.8 298,531 - +1.5 298,532 + +1.0 298,563 + +0.9 298,575 + CA265_RS01190 0.13 -1.8 298,583 + CA265_RS01190 0.14 +0.6 298,584 - CA265_RS01190 0.15 +0.3 298,632 - CA265_RS01190 0.25 -0.1 298,634 + CA265_RS01190 0.26 -0.9 298,664 - CA265_RS01190 0.33 +1.2 298,678 - CA265_RS01190 0.36 +2.7 298,691 + CA265_RS01190 0.39 +0.7 298,692 - CA265_RS01190 0.39 +0.5 298,721 + CA265_RS01190 0.45 -1.9 298,743 - CA265_RS01190 0.50 +0.4 298,767 + CA265_RS01190 0.56 -1.3 298,768 - CA265_RS01190 0.56 +0.9 298,768 - CA265_RS01190 0.56 +1.2 298,769 + CA265_RS01190 0.56 -1.5 298,769 + CA265_RS01190 0.56 -0.9 298,837 - CA265_RS01190 0.72 +1.2 298,867 - CA265_RS01190 0.78 +0.4 298,949 - -0.3 298,982 + +0.0 299,033 - CA265_RS01195 0.13 +2.8 299,045 - CA265_RS01195 0.15 +1.5 299,078 + CA265_RS01195 0.23 -0.9 299,078 + CA265_RS01195 0.23 +0.8 299,082 + CA265_RS01195 0.24 -1.1 299,107 - CA265_RS01195 0.30 +2.6 299,151 + CA265_RS01195 0.41 -0.3 299,152 - CA265_RS01195 0.41 +2.0 299,186 + CA265_RS01195 0.50 +0.2 299,186 + CA265_RS01195 0.50 +2.7 299,250 + CA265_RS01195 0.65 +1.2 299,281 + CA265_RS01195 0.72 +0.4 299,282 - CA265_RS01195 0.73 +2.4 299,282 - CA265_RS01195 0.73 +2.2 299,292 + CA265_RS01195 0.75 -1.3 299,368 - +2.7 299,378 - +0.7 299,406 + +1.3 299,407 - +2.3 299,427 - +2.6 299,431 - +2.4 299,441 - +2.4 299,499 + CA265_RS01200 0.13 +1.0 299,612 + CA265_RS01200 0.35 +0.4 299,619 - CA265_RS01200 0.36 +1.6 299,619 - CA265_RS01200 0.36 +1.5 299,698 + CA265_RS01200 0.52 -2.8 299,730 - CA265_RS01200 0.58 +1.6 299,754 + +2.7 299,755 - CA265_RS01200 0.62 +1.4 299,755 - CA265_RS01200 0.62 +1.6 299,757 + CA265_RS01200 0.63 +0.7 299,757 + CA265_RS01200 0.63 -0.4 299,758 - CA265_RS01200 0.63 +3.0 299,764 + CA265_RS01200 0.64 +0.9 299,795 - CA265_RS01200 0.70 +2.5 299,810 - CA265_RS01200 0.73 +1.9 299,876 + CA265_RS01200 0.86 -0.6 299,877 - CA265_RS01200 0.86 +2.0
Or see this region's nucleotide sequence