Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00825 and CA265_RS00830 are separated by 13 nucleotides CA265_RS00830 and CA265_RS00835 are separated by 166 nucleotides CA265_RS00835 and CA265_RS00840 overlap by 4 nucleotides
CA265_RS00825: CA265_RS00825 - hypothetical protein, at 196,173 to 197,621
_RS00825
CA265_RS00830: CA265_RS00830 - hypothetical protein, at 197,635 to 198,066
_RS00830
CA265_RS00835: CA265_RS00835 - hypothetical protein, at 198,233 to 199,228
_RS00835
CA265_RS00840: CA265_RS00840 - hypothetical protein, at 199,225 to 200,304
_RS00840
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.268 kb on - strand, within CA265_RS00825 at 197.269 kb on + strand, within CA265_RS00825 at 197.276 kb on - strand, within CA265_RS00825 at 197.295 kb on + strand at 197.378 kb on - strand, within CA265_RS00825 at 197.411 kb on - strand, within CA265_RS00825 at 197.519 kb on + strand at 197.536 kb on - strand at 197.536 kb on - strand at 197.537 kb on + strand at 197.549 kb on + strand at 197.550 kb on - strand at 197.661 kb on + strand at 197.672 kb on + strand at 197.672 kb on + strand at 197.673 kb on - strand at 197.705 kb on + strand, within CA265_RS00830 at 197.790 kb on + strand, within CA265_RS00830 at 197.795 kb on + strand, within CA265_RS00830 at 197.796 kb on - strand, within CA265_RS00830 at 197.889 kb on + strand, within CA265_RS00830 at 197.962 kb on - strand, within CA265_RS00830 at 197.996 kb on + strand, within CA265_RS00830 at 198.064 kb on + strand at 198.065 kb on - strand at 198.068 kb on + strand at 198.137 kb on + strand at 198.138 kb on - strand at 198.138 kb on - strand at 198.191 kb on - strand at 198.196 kb on - strand at 198.225 kb on + strand at 198.257 kb on + strand at 198.375 kb on - strand, within CA265_RS00835 at 198.375 kb on - strand, within CA265_RS00835 at 198.467 kb on + strand, within CA265_RS00835 at 198.472 kb on + strand, within CA265_RS00835 at 198.472 kb on + strand, within CA265_RS00835 at 198.546 kb on - strand, within CA265_RS00835 at 198.546 kb on - strand, within CA265_RS00835 at 198.583 kb on - strand, within CA265_RS00835 at 198.668 kb on - strand, within CA265_RS00835 at 198.710 kb on + strand, within CA265_RS00835 at 198.757 kb on + strand, within CA265_RS00835 at 198.757 kb on + strand, within CA265_RS00835 at 198.758 kb on - strand, within CA265_RS00835 at 198.760 kb on - strand, within CA265_RS00835 at 198.760 kb on - strand, within CA265_RS00835 at 198.760 kb on - strand, within CA265_RS00835 at 198.838 kb on - strand, within CA265_RS00835 at 198.838 kb on - strand at 198.860 kb on - strand, within CA265_RS00835 at 198.982 kb on + strand, within CA265_RS00835 at 199.002 kb on + strand, within CA265_RS00835 at 199.028 kb on + strand, within CA265_RS00835 at 199.049 kb on - strand, within CA265_RS00835 at 199.060 kb on + strand, within CA265_RS00835 at 199.061 kb on - strand, within CA265_RS00835 at 199.061 kb on - strand, within CA265_RS00835 at 199.063 kb on - strand, within CA265_RS00835 at 199.100 kb on - strand, within CA265_RS00835 at 199.117 kb on + strand, within CA265_RS00835 at 199.118 kb on - strand, within CA265_RS00835 at 199.118 kb on - strand, within CA265_RS00835 at 199.173 kb on - strand at 199.242 kb on + strand at 199.355 kb on + strand, within CA265_RS00840 at 199.355 kb on + strand, within CA265_RS00840 at 199.356 kb on - strand, within CA265_RS00840 at 199.357 kb on + strand, within CA265_RS00840 at 199.357 kb on + strand, within CA265_RS00840 at 199.387 kb on - strand, within CA265_RS00840 at 199.388 kb on + strand, within CA265_RS00840 at 199.389 kb on - strand, within CA265_RS00840 at 199.389 kb on - strand, within CA265_RS00840 at 199.416 kb on + strand, within CA265_RS00840 at 199.418 kb on + strand, within CA265_RS00840 at 199.419 kb on - strand, within CA265_RS00840 at 199.419 kb on - strand, within CA265_RS00840 at 199.444 kb on - strand, within CA265_RS00840 at 199.445 kb on + strand, within CA265_RS00840 at 199.467 kb on - strand, within CA265_RS00840 at 199.477 kb on + strand, within CA265_RS00840 at 199.477 kb on + strand, within CA265_RS00840 at 199.478 kb on - strand, within CA265_RS00840 at 199.479 kb on + strand, within CA265_RS00840 at 199.564 kb on + strand, within CA265_RS00840 at 199.565 kb on - strand, within CA265_RS00840 at 199.565 kb on - strand, within CA265_RS00840 at 199.580 kb on + strand, within CA265_RS00840 at 199.609 kb on + strand, within CA265_RS00840 at 199.611 kb on + strand, within CA265_RS00840 at 199.631 kb on + strand, within CA265_RS00840 at 199.651 kb on - strand, within CA265_RS00840 at 199.676 kb on + strand, within CA265_RS00840 at 199.677 kb on - strand, within CA265_RS00840 at 199.705 kb on - strand, within CA265_RS00840 at 199.773 kb on + strand, within CA265_RS00840 at 199.776 kb on + strand, within CA265_RS00840 at 199.777 kb on - strand, within CA265_RS00840 at 199.778 kb on + strand, within CA265_RS00840 at 199.778 kb on + strand, within CA265_RS00840 at 199.779 kb on - strand, within CA265_RS00840 at 199.875 kb on - strand, within CA265_RS00840 at 199.875 kb on - strand, within CA265_RS00840 at 199.913 kb on + strand, within CA265_RS00840 at 199.952 kb on + strand, within CA265_RS00840 at 199.952 kb on + strand, within CA265_RS00840 at 199.953 kb on - strand, within CA265_RS00840 at 199.953 kb on - strand, within CA265_RS00840 at 200.005 kb on + strand, within CA265_RS00840 at 200.019 kb on + strand, within CA265_RS00840 at 200.019 kb on + strand, within CA265_RS00840 at 200.047 kb on - strand, within CA265_RS00840 at 200.064 kb on + strand, within CA265_RS00840 at 200.179 kb on - strand, within CA265_RS00840 at 200.181 kb on - strand, within CA265_RS00840 at 200.181 kb on - strand, within CA265_RS00840 at 200.227 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 197,268 - CA265_RS00825 0.76 +1.3 197,269 + CA265_RS00825 0.76 +0.4 197,276 - CA265_RS00825 0.76 -0.7 197,295 + +0.1 197,378 - CA265_RS00825 0.83 -0.6 197,411 - CA265_RS00825 0.85 -0.2 197,519 + +0.9 197,536 - +1.6 197,536 - +0.6 197,537 + -0.9 197,549 + +0.5 197,550 - -0.3 197,661 + -1.9 197,672 + +0.7 197,672 + +0.5 197,673 - +1.3 197,705 + CA265_RS00830 0.16 -1.9 197,790 + CA265_RS00830 0.36 -0.4 197,795 + CA265_RS00830 0.37 +0.1 197,796 - CA265_RS00830 0.37 -0.4 197,889 + CA265_RS00830 0.59 -1.1 197,962 - CA265_RS00830 0.76 +0.2 197,996 + CA265_RS00830 0.84 -0.0 198,064 + +0.0 198,065 - -1.0 198,068 + +0.9 198,137 + +0.5 198,138 - -0.4 198,138 - +0.5 198,191 - -0.7 198,196 - +0.0 198,225 + -0.3 198,257 + -2.0 198,375 - CA265_RS00835 0.14 +0.5 198,375 - CA265_RS00835 0.14 -0.4 198,467 + CA265_RS00835 0.23 +0.7 198,472 + CA265_RS00835 0.24 -0.9 198,472 + CA265_RS00835 0.24 -1.0 198,546 - CA265_RS00835 0.31 -1.7 198,546 - CA265_RS00835 0.31 +1.0 198,583 - CA265_RS00835 0.35 +2.0 198,668 - CA265_RS00835 0.44 -1.0 198,710 + CA265_RS00835 0.48 +1.7 198,757 + CA265_RS00835 0.53 -0.6 198,757 + CA265_RS00835 0.53 +0.6 198,758 - CA265_RS00835 0.53 -1.9 198,760 - CA265_RS00835 0.53 -2.7 198,760 - CA265_RS00835 0.53 -0.3 198,760 - CA265_RS00835 0.53 -0.7 198,838 - CA265_RS00835 0.61 +1.0 198,838 - +1.5 198,860 - CA265_RS00835 0.63 -0.9 198,982 + CA265_RS00835 0.75 -1.1 199,002 + CA265_RS00835 0.77 -0.3 199,028 + CA265_RS00835 0.80 -1.2 199,049 - CA265_RS00835 0.82 -0.4 199,060 + CA265_RS00835 0.83 +0.3 199,061 - CA265_RS00835 0.83 -0.5 199,061 - CA265_RS00835 0.83 -0.6 199,063 - CA265_RS00835 0.83 +0.5 199,100 - CA265_RS00835 0.87 -3.1 199,117 + CA265_RS00835 0.89 -1.3 199,118 - CA265_RS00835 0.89 -1.1 199,118 - CA265_RS00835 0.89 -0.3 199,173 - +0.1 199,242 + -0.8 199,355 + CA265_RS00840 0.12 -0.1 199,355 + CA265_RS00840 0.12 -2.7 199,356 - CA265_RS00840 0.12 -0.8 199,357 + CA265_RS00840 0.12 -0.5 199,357 + CA265_RS00840 0.12 +0.0 199,387 - CA265_RS00840 0.15 -0.5 199,388 + CA265_RS00840 0.15 -0.3 199,389 - CA265_RS00840 0.15 -0.6 199,389 - CA265_RS00840 0.15 +1.3 199,416 + CA265_RS00840 0.18 +0.0 199,418 + CA265_RS00840 0.18 +0.5 199,419 - CA265_RS00840 0.18 -2.8 199,419 - CA265_RS00840 0.18 -0.1 199,444 - CA265_RS00840 0.20 -0.2 199,445 + CA265_RS00840 0.20 -2.2 199,467 - CA265_RS00840 0.22 -2.9 199,477 + CA265_RS00840 0.23 -0.8 199,477 + CA265_RS00840 0.23 +1.1 199,478 - CA265_RS00840 0.23 -1.6 199,479 + CA265_RS00840 0.24 -0.2 199,564 + CA265_RS00840 0.31 +0.2 199,565 - CA265_RS00840 0.31 +0.7 199,565 - CA265_RS00840 0.31 +0.5 199,580 + CA265_RS00840 0.33 +0.7 199,609 + CA265_RS00840 0.36 -0.1 199,611 + CA265_RS00840 0.36 +0.5 199,631 + CA265_RS00840 0.38 +0.1 199,651 - CA265_RS00840 0.39 -0.7 199,676 + CA265_RS00840 0.42 -0.8 199,677 - CA265_RS00840 0.42 -2.7 199,705 - CA265_RS00840 0.44 +0.2 199,773 + CA265_RS00840 0.51 -0.9 199,776 + CA265_RS00840 0.51 -0.2 199,777 - CA265_RS00840 0.51 +0.7 199,778 + CA265_RS00840 0.51 +0.8 199,778 + CA265_RS00840 0.51 +0.6 199,779 - CA265_RS00840 0.51 -1.7 199,875 - CA265_RS00840 0.60 +0.2 199,875 - CA265_RS00840 0.60 +0.2 199,913 + CA265_RS00840 0.64 +1.1 199,952 + CA265_RS00840 0.67 +1.0 199,952 + CA265_RS00840 0.67 -1.0 199,953 - CA265_RS00840 0.67 +1.9 199,953 - CA265_RS00840 0.67 +0.2 200,005 + CA265_RS00840 0.72 -0.1 200,019 + CA265_RS00840 0.74 -0.2 200,019 + CA265_RS00840 0.74 +1.4 200,047 - CA265_RS00840 0.76 +0.1 200,064 + CA265_RS00840 0.78 +0.6 200,179 - CA265_RS00840 0.88 +0.0 200,181 - CA265_RS00840 0.89 +0.0 200,181 - CA265_RS00840 0.89 +0.3 200,227 + +0.7
Or see this region's nucleotide sequence