Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25755 and AO356_25760 are separated by 132 nucleotides AO356_25760 and AO356_25765 are separated by 12 nucleotides AO356_25765 and AO356_25770 overlap by 4 nucleotides AO356_25770 and AO356_25775 are separated by 44 nucleotides
AO356_25755: AO356_25755 - 4-carboxymuconolactone decarboxylase, at 5,823,824 to 5,824,228
_25755
AO356_25760: AO356_25760 - flavin reductase, at 5,824,361 to 5,824,846
_25760
AO356_25765: AO356_25765 - carnitine dehydratase, at 5,824,859 to 5,826,340
_25765
AO356_25770: AO356_25770 - 3-oxoadipate enol-lactonase, at 5,826,337 to 5,827,170
_25770
AO356_25775: AO356_25775 - peptide synthetase, at 5,827,215 to 5,827,805
_25775
Position (kb) 5824
5825
5826
5827 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5823.921 kb on + strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.951 kb on - strand, within AO356_25755 at 5824.167 kb on + strand, within AO356_25755 at 5824.167 kb on + strand, within AO356_25755 at 5824.482 kb on + strand, within AO356_25760 at 5824.483 kb on - strand, within AO356_25760 at 5824.483 kb on - strand, within AO356_25760 at 5824.602 kb on + strand, within AO356_25760 at 5824.686 kb on + strand, within AO356_25760 at 5824.687 kb on - strand, within AO356_25760 at 5824.687 kb on - strand, within AO356_25760 at 5824.827 kb on + strand at 5824.828 kb on - strand at 5824.828 kb on - strand at 5824.860 kb on + strand at 5824.928 kb on - strand at 5825.016 kb on + strand, within AO356_25765 at 5825.241 kb on + strand, within AO356_25765 at 5825.241 kb on + strand, within AO356_25765 at 5825.242 kb on - strand, within AO356_25765 at 5825.242 kb on - strand, within AO356_25765 at 5825.445 kb on + strand, within AO356_25765 at 5825.446 kb on - strand, within AO356_25765 at 5825.506 kb on - strand, within AO356_25765 at 5825.560 kb on + strand, within AO356_25765 at 5825.561 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.926 kb on + strand, within AO356_25765 at 5825.926 kb on + strand, within AO356_25765 at 5826.355 kb on + strand at 5826.428 kb on - strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.439 kb on - strand, within AO356_25770 at 5826.439 kb on - strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.611 kb on + strand, within AO356_25770 at 5826.612 kb on - strand, within AO356_25770 at 5826.612 kb on - strand, within AO356_25770 at 5826.692 kb on + strand, within AO356_25770 at 5826.692 kb on + strand, within AO356_25770 at 5827.127 kb on + strand at 5827.128 kb on - strand at 5827.255 kb on + strand at 5827.255 kb on + strand at 5827.255 kb on + strand at 5827.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,823,921 + AO356_25755 0.24 -0.6 5,823,922 - AO356_25755 0.24 -0.1 5,823,922 - AO356_25755 0.24 +0.9 5,823,922 - AO356_25755 0.24 +0.7 5,823,922 - AO356_25755 0.24 +0.5 5,823,951 - AO356_25755 0.31 +0.7 5,824,167 + AO356_25755 0.85 +1.5 5,824,167 + AO356_25755 0.85 -0.3 5,824,482 + AO356_25760 0.25 +0.1 5,824,483 - AO356_25760 0.25 +0.9 5,824,483 - AO356_25760 0.25 +0.3 5,824,602 + AO356_25760 0.50 +1.1 5,824,686 + AO356_25760 0.67 -0.1 5,824,687 - AO356_25760 0.67 -0.2 5,824,687 - AO356_25760 0.67 -1.2 5,824,827 + +0.1 5,824,828 - -0.3 5,824,828 - -0.2 5,824,860 + +0.6 5,824,928 - -0.7 5,825,016 + AO356_25765 0.11 -0.0 5,825,241 + AO356_25765 0.26 +1.3 5,825,241 + AO356_25765 0.26 -0.3 5,825,242 - AO356_25765 0.26 +2.8 5,825,242 - AO356_25765 0.26 +0.4 5,825,445 + AO356_25765 0.40 +1.1 5,825,446 - AO356_25765 0.40 +0.3 5,825,506 - AO356_25765 0.44 +0.0 5,825,560 + AO356_25765 0.47 +0.3 5,825,561 - AO356_25765 0.47 -0.3 5,825,869 - AO356_25765 0.68 +0.6 5,825,869 - AO356_25765 0.68 -0.9 5,825,869 - AO356_25765 0.68 +0.2 5,825,926 + AO356_25765 0.72 +0.5 5,825,926 + AO356_25765 0.72 -0.0 5,826,355 + -0.6 5,826,428 - AO356_25770 0.11 +0.4 5,826,438 + AO356_25770 0.12 +1.3 5,826,438 + AO356_25770 0.12 -1.8 5,826,438 + AO356_25770 0.12 +0.5 5,826,439 - AO356_25770 0.12 +0.5 5,826,439 - AO356_25770 0.12 -0.1 5,826,584 + AO356_25770 0.30 +0.3 5,826,584 + AO356_25770 0.30 +0.8 5,826,584 + AO356_25770 0.30 +0.3 5,826,611 + AO356_25770 0.33 -0.9 5,826,612 - AO356_25770 0.33 -0.5 5,826,612 - AO356_25770 0.33 +0.2 5,826,692 + AO356_25770 0.43 +1.3 5,826,692 + AO356_25770 0.43 +0.2 5,827,127 + -0.9 5,827,128 - +0.9 5,827,255 + -0.3 5,827,255 + +0.3 5,827,255 + +0.9 5,827,256 - -0.6
Or see this region's nucleotide sequence