Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24585

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24580 and AO356_24585 are separated by 251 nucleotidesAO356_24585 and AO356_24590 are separated by 193 nucleotides AO356_24580: AO356_24580 - GntR family transcriptional regulator, at 5,557,054 to 5,557,773 _24580 AO356_24585: AO356_24585 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 5,558,025 to 5,559,761 _24585 AO356_24590: AO356_24590 - MFS transporter, at 5,559,955 to 5,561,277 _24590 Position (kb) 5558 5559 5560Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5557.052 kb on + strandat 5557.368 kb on - strand, within AO356_24580at 5557.440 kb on + strand, within AO356_24580at 5557.527 kb on + strand, within AO356_24580at 5557.527 kb on + strand, within AO356_24580at 5557.528 kb on - strand, within AO356_24580at 5557.528 kb on - strand, within AO356_24580at 5557.528 kb on - strand, within AO356_24580at 5557.577 kb on + strand, within AO356_24580at 5557.641 kb on - strand, within AO356_24580at 5557.762 kb on - strandat 5557.762 kb on - strandat 5557.816 kb on + strandat 5557.817 kb on - strandat 5557.859 kb on + strandat 5557.860 kb on - strandat 5557.863 kb on + strandat 5558.043 kb on + strandat 5558.117 kb on - strandat 5558.117 kb on - strandat 5558.503 kb on + strand, within AO356_24585at 5558.503 kb on + strand, within AO356_24585at 5558.504 kb on - strand, within AO356_24585at 5558.504 kb on - strand, within AO356_24585at 5558.677 kb on + strand, within AO356_24585at 5558.677 kb on + strand, within AO356_24585at 5558.677 kb on + strand, within AO356_24585at 5558.678 kb on - strand, within AO356_24585at 5558.678 kb on - strand, within AO356_24585at 5558.678 kb on - strand, within AO356_24585at 5558.797 kb on + strand, within AO356_24585at 5558.798 kb on - strand, within AO356_24585at 5559.056 kb on + strand, within AO356_24585at 5559.056 kb on + strand, within AO356_24585at 5559.056 kb on + strand, within AO356_24585at 5559.057 kb on - strand, within AO356_24585at 5559.057 kb on - strand, within AO356_24585at 5559.057 kb on - strand, within AO356_24585at 5559.070 kb on + strand, within AO356_24585at 5559.070 kb on + strand, within AO356_24585at 5559.070 kb on + strand, within AO356_24585at 5559.071 kb on - strand, within AO356_24585at 5559.807 kb on - strandat 5559.807 kb on - strandat 5559.807 kb on - strandat 5559.976 kb on - strandat 5559.987 kb on + strandat 5559.988 kb on - strandat 5560.021 kb on + strandat 5560.105 kb on + strand, within AO356_24590at 5560.138 kb on + strand, within AO356_24590at 5560.138 kb on + strand, within AO356_24590at 5560.263 kb on + strand, within AO356_24590at 5560.264 kb on - strand, within AO356_24590at 5560.264 kb on - strand, within AO356_24590at 5560.264 kb on - strand, within AO356_24590at 5560.264 kb on - strand, within AO356_24590at 5560.270 kb on + strand, within AO356_24590at 5560.270 kb on + strand, within AO356_24590at 5560.270 kb on + strand, within AO356_24590at 5560.271 kb on - strand, within AO356_24590at 5560.271 kb on - strand, within AO356_24590at 5560.327 kb on + strand, within AO356_24590at 5560.327 kb on + strand, within AO356_24590at 5560.328 kb on - strand, within AO356_24590at 5560.328 kb on - strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.331 kb on - strand, within AO356_24590at 5560.331 kb on - strand, within AO356_24590at 5560.398 kb on + strand, within AO356_24590at 5560.398 kb on + strand, within AO356_24590at 5560.696 kb on + strand, within AO356_24590at 5560.696 kb on + strand, within AO356_24590at 5560.720 kb on + strand, within AO356_24590at 5560.720 kb on + strand, within AO356_24590at 5560.721 kb on - strand, within AO356_24590at 5560.721 kb on - strand, within AO356_24590at 5560.721 kb on - strand, within AO356_24590

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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5,557,052 + -0.8
5,557,368 - AO356_24580 0.44 +0.7
5,557,440 + AO356_24580 0.54 +0.7
5,557,527 + AO356_24580 0.66 +0.1
5,557,527 + AO356_24580 0.66 -0.3
5,557,528 - AO356_24580 0.66 +1.3
5,557,528 - AO356_24580 0.66 +0.2
5,557,528 - AO356_24580 0.66 +1.0
5,557,577 + AO356_24580 0.73 +0.7
5,557,641 - AO356_24580 0.82 +0.7
5,557,762 - +2.1
5,557,762 - +1.7
5,557,816 + +0.2
5,557,817 - -1.0
5,557,859 + +0.6
5,557,860 - +0.6
5,557,863 + +0.5
5,558,043 + +0.9
5,558,117 - +0.9
5,558,117 - +0.1
5,558,503 + AO356_24585 0.28 +0.3
5,558,503 + AO356_24585 0.28 +0.3
5,558,504 - AO356_24585 0.28 +0.6
5,558,504 - AO356_24585 0.28 -0.3
5,558,677 + AO356_24585 0.38 +0.8
5,558,677 + AO356_24585 0.38 -0.1
5,558,677 + AO356_24585 0.38 +0.5
5,558,678 - AO356_24585 0.38 +0.5
5,558,678 - AO356_24585 0.38 +0.8
5,558,678 - AO356_24585 0.38 -0.3
5,558,797 + AO356_24585 0.44 +0.6
5,558,798 - AO356_24585 0.45 -0.8
5,559,056 + AO356_24585 0.59 +0.9
5,559,056 + AO356_24585 0.59 +1.3
5,559,056 + AO356_24585 0.59 -0.0
5,559,057 - AO356_24585 0.59 +0.0
5,559,057 - AO356_24585 0.59 -0.3
5,559,057 - AO356_24585 0.59 +0.2
5,559,070 + AO356_24585 0.60 +0.2
5,559,070 + AO356_24585 0.60 -2.9
5,559,070 + AO356_24585 0.60 +0.4
5,559,071 - AO356_24585 0.60 +0.4
5,559,807 - -0.1
5,559,807 - -1.0
5,559,807 - -0.6
5,559,976 - -2.7
5,559,987 + -0.6
5,559,988 - -0.9
5,560,021 + -0.0
5,560,105 + AO356_24590 0.11 +0.5
5,560,138 + AO356_24590 0.14 -0.4
5,560,138 + AO356_24590 0.14 -0.2
5,560,263 + AO356_24590 0.23 +0.2
5,560,264 - AO356_24590 0.23 -0.8
5,560,264 - AO356_24590 0.23 -2.4
5,560,264 - AO356_24590 0.23 -0.4
5,560,264 - AO356_24590 0.23 -0.5
5,560,270 + AO356_24590 0.24 -1.0
5,560,270 + AO356_24590 0.24 -1.9
5,560,270 + AO356_24590 0.24 +0.0
5,560,271 - AO356_24590 0.24 -0.6
5,560,271 - AO356_24590 0.24 +0.7
5,560,327 + AO356_24590 0.28 +0.3
5,560,327 + AO356_24590 0.28 -0.7
5,560,328 - AO356_24590 0.28 -0.1
5,560,328 - AO356_24590 0.28 +0.5
5,560,330 + AO356_24590 0.28 -1.8
5,560,330 + AO356_24590 0.28 -1.1
5,560,330 + AO356_24590 0.28 +0.8
5,560,330 + AO356_24590 0.28 -0.6
5,560,330 + AO356_24590 0.28 -0.8
5,560,330 + AO356_24590 0.28 +0.7
5,560,331 - AO356_24590 0.28 +0.5
5,560,331 - AO356_24590 0.28 -0.6
5,560,398 + AO356_24590 0.33 -0.0
5,560,398 + AO356_24590 0.33 +0.7
5,560,696 + AO356_24590 0.56 +0.4
5,560,696 + AO356_24590 0.56 +0.5
5,560,720 + AO356_24590 0.58 +1.9
5,560,720 + AO356_24590 0.58 -0.7
5,560,721 - AO356_24590 0.58 +0.6
5,560,721 - AO356_24590 0.58 +0.8
5,560,721 - AO356_24590 0.58 -1.3

Or see this region's nucleotide sequence