Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19520

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_19510 and AO356_19515 are separated by 73 nucleotidesAO356_19515 and AO356_19520 are separated by 130 nucleotidesAO356_19520 and AO356_19525 are separated by 254 nucleotides AO356_19510: AO356_19510 - DNA mismatch repair protein MutS, at 4,377,986 to 4,378,543 _19510 AO356_19515: AO356_19515 - hypothetical protein, at 4,378,617 to 4,378,937 _19515 AO356_19520: AO356_19520 - isochorismatase, at 4,379,068 to 4,379,658 _19520 AO356_19525: AO356_19525 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 4,379,913 to 4,380,821 _19525 Position (kb) 4379 4380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4378.192 kb on + strand, within AO356_19510at 4378.193 kb on - strand, within AO356_19510at 4378.497 kb on - strandat 4378.497 kb on - strandat 4378.717 kb on - strand, within AO356_19515at 4378.717 kb on - strand, within AO356_19515at 4378.979 kb on + strandat 4378.979 kb on + strandat 4379.168 kb on + strand, within AO356_19520at 4379.168 kb on + strand, within AO356_19520at 4379.168 kb on + strand, within AO356_19520at 4379.168 kb on + strand, within AO356_19520at 4379.169 kb on - strand, within AO356_19520at 4379.169 kb on - strand, within AO356_19520at 4379.169 kb on - strand, within AO356_19520at 4379.559 kb on - strand, within AO356_19520at 4379.616 kb on - strandat 4379.753 kb on + strandat 4379.753 kb on + strandat 4379.785 kb on + strandat 4379.785 kb on + strandat 4379.785 kb on + strandat 4379.785 kb on + strandat 4379.785 kb on + strandat 4379.786 kb on - strandat 4379.786 kb on - strandat 4379.786 kb on - strandat 4379.786 kb on - strandat 4379.786 kb on - strandat 4379.786 kb on - strandat 4379.786 kb on - strandat 4379.786 kb on - strandat 4379.806 kb on - strandat 4379.878 kb on - strandat 4379.948 kb on + strandat 4379.948 kb on + strandat 4380.074 kb on + strand, within AO356_19525at 4380.074 kb on + strand, within AO356_19525at 4380.074 kb on + strand, within AO356_19525at 4380.078 kb on + strand, within AO356_19525at 4380.078 kb on + strand, within AO356_19525at 4380.078 kb on + strand, within AO356_19525at 4380.079 kb on - strand, within AO356_19525at 4380.165 kb on + strand, within AO356_19525at 4380.165 kb on + strand, within AO356_19525at 4380.165 kb on + strand, within AO356_19525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
4,378,192 + AO356_19510 0.37 -0.7
4,378,193 - AO356_19510 0.37 -0.1
4,378,497 - -0.6
4,378,497 - +0.3
4,378,717 - AO356_19515 0.31 +0.1
4,378,717 - AO356_19515 0.31 +0.7
4,378,979 + -1.1
4,378,979 + -0.6
4,379,168 + AO356_19520 0.17 -2.9
4,379,168 + AO356_19520 0.17 -2.0
4,379,168 + AO356_19520 0.17 -2.7
4,379,168 + AO356_19520 0.17 -2.0
4,379,169 - AO356_19520 0.17 -0.1
4,379,169 - AO356_19520 0.17 -1.6
4,379,169 - AO356_19520 0.17 -3.0
4,379,559 - AO356_19520 0.83 -2.5
4,379,616 - -2.7
4,379,753 + -0.4
4,379,753 + +0.2
4,379,785 + -0.6
4,379,785 + -1.2
4,379,785 + -0.4
4,379,785 + -1.1
4,379,785 + +2.4
4,379,786 - +0.9
4,379,786 - -0.1
4,379,786 - +0.5
4,379,786 - +1.0
4,379,786 - +0.9
4,379,786 - +0.1
4,379,786 - +0.9
4,379,786 - +1.9
4,379,806 - +0.3
4,379,878 - -0.3
4,379,948 + -0.3
4,379,948 + +0.2
4,380,074 + AO356_19525 0.18 -0.2
4,380,074 + AO356_19525 0.18 +0.5
4,380,074 + AO356_19525 0.18 +0.3
4,380,078 + AO356_19525 0.18 +1.3
4,380,078 + AO356_19525 0.18 -0.2
4,380,078 + AO356_19525 0.18 -0.3
4,380,079 - AO356_19525 0.18 +0.7
4,380,165 + AO356_19525 0.28 -1.1
4,380,165 + AO356_19525 0.28 +0.7
4,380,165 + AO356_19525 0.28 -0.7

Or see this region's nucleotide sequence