Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07445

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07435 and AO356_07440 are separated by 4 nucleotidesAO356_07440 and AO356_07445 are separated by 66 nucleotidesAO356_07445 and AO356_07450 are separated by 16 nucleotidesAO356_07450 and AO356_07455 are separated by 8 nucleotides AO356_07435: AO356_07435 - preprotein translocase subunit SecG, at 1,646,057 to 1,646,440 _07435 AO356_07440: AO356_07440 - triosephosphate isomerase, at 1,646,445 to 1,647,200 _07440 AO356_07445: AO356_07445 - phosphoglucosamine mutase, at 1,647,267 to 1,648,604 _07445 AO356_07450: AO356_07450 - dihydropteroate synthase, at 1,648,621 to 1,649,472 _07450 AO356_07455: AO356_07455 - ATP-dependent metalloprotease, at 1,649,481 to 1,651,394 _07455 Position (kb) 1647 1648 1649Strain fitness (log2 ratio) -1 0 1 2at 1647.206 kb on - strandat 1647.206 kb on - strandat 1647.206 kb on - strandat 1648.623 kb on - strandat 1648.623 kb on - strandat 1648.623 kb on - strandat 1648.623 kb on - strandat 1648.623 kb on - strandat 1648.623 kb on - strandat 1649.483 kb on - strandat 1649.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,647,206 - +0.3
1,647,206 - -0.7
1,647,206 - +2.2
1,648,623 - -1.3
1,648,623 - -0.2
1,648,623 - -0.7
1,648,623 - -0.1
1,648,623 - -0.5
1,648,623 - +0.3
1,649,483 - -0.5
1,649,556 - +0.8

Or see this region's nucleotide sequence