Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07435 and AO356_07440 are separated by 4 nucleotides AO356_07440 and AO356_07445 are separated by 66 nucleotides AO356_07445 and AO356_07450 are separated by 16 nucleotides AO356_07450 and AO356_07455 are separated by 8 nucleotides
AO356_07435: AO356_07435 - preprotein translocase subunit SecG, at 1,646,057 to 1,646,440
_07435
AO356_07440: AO356_07440 - triosephosphate isomerase, at 1,646,445 to 1,647,200
_07440
AO356_07445: AO356_07445 - phosphoglucosamine mutase, at 1,647,267 to 1,648,604
_07445
AO356_07450: AO356_07450 - dihydropteroate synthase, at 1,648,621 to 1,649,472
_07450
AO356_07455: AO356_07455 - ATP-dependent metalloprotease, at 1,649,481 to 1,651,394
_07455
Position (kb)
1647
1648
1649 Strain fitness (log2 ratio)
-1
0
1
2 at 1647.206 kb on - strand at 1647.206 kb on - strand at 1647.206 kb on - strand at 1648.623 kb on - strand at 1648.623 kb on - strand at 1648.623 kb on - strand at 1648.623 kb on - strand at 1648.623 kb on - strand at 1648.623 kb on - strand at 1649.483 kb on - strand at 1649.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,647,206 - +0.3 1,647,206 - -0.7 1,647,206 - +2.2 1,648,623 - -1.3 1,648,623 - -0.2 1,648,623 - -0.7 1,648,623 - -0.1 1,648,623 - -0.5 1,648,623 - +0.3 1,649,483 - -0.5 1,649,556 - +0.8
Or see this region's nucleotide sequence