Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01685 and AO356_01690 are separated by 123 nucleotides AO356_01690 and AO356_01695 are separated by 7 nucleotides AO356_01695 and AO356_01700 are separated by 186 nucleotides
AO356_01685: AO356_01685 - type IV secretion protein Rhs, at 378,761 to 380,167
_01685
AO356_01690: AO356_01690 - cytochrome B, at 380,291 to 380,839
_01690
AO356_01695: AO356_01695 - 1-aminocyclopropane-1-carboxylate deaminase, at 380,847 to 381,755
_01695
AO356_01700: AO356_01700 - 2,4-dienoyl-CoA reductase, at 381,942 to 383,981
_01700
Position (kb) 380
381
382 Strain fitness (log2 ratio) -1
0
1 at 379.854 kb on + strand, within AO356_01685 at 379.854 kb on + strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 380.233 kb on - strand at 380.233 kb on - strand at 380.233 kb on - strand at 380.237 kb on + strand at 380.237 kb on + strand at 380.323 kb on + strand at 380.323 kb on + strand at 380.323 kb on + strand at 380.324 kb on - strand at 380.324 kb on - strand at 380.582 kb on + strand, within AO356_01690 at 380.583 kb on - strand, within AO356_01690 at 380.654 kb on + strand, within AO356_01690 at 380.654 kb on + strand, within AO356_01690 at 380.654 kb on + strand, within AO356_01690 at 380.654 kb on + strand, within AO356_01690 at 380.655 kb on - strand, within AO356_01690 at 380.655 kb on - strand, within AO356_01690 at 380.655 kb on - strand, within AO356_01690 at 380.790 kb on - strand at 380.790 kb on - strand at 380.790 kb on - strand at 380.966 kb on - strand, within AO356_01695 at 381.151 kb on + strand, within AO356_01695 at 381.232 kb on + strand, within AO356_01695 at 381.544 kb on + strand, within AO356_01695 at 381.789 kb on + strand at 381.789 kb on + strand at 381.789 kb on + strand at 381.790 kb on - strand at 381.790 kb on - strand at 381.943 kb on + strand at 381.943 kb on + strand at 381.944 kb on - strand at 382.178 kb on - strand, within AO356_01700 at 382.178 kb on - strand, within AO356_01700 at 382.516 kb on + strand, within AO356_01700 at 382.517 kb on - strand, within AO356_01700 at 382.681 kb on + strand, within AO356_01700 at 382.682 kb on - strand, within AO356_01700
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 379,854 + AO356_01685 0.78 -0.1 379,854 + AO356_01685 0.78 +0.3 379,855 - AO356_01685 0.78 +0.7 379,855 - AO356_01685 0.78 +0.6 379,855 - AO356_01685 0.78 +0.2 379,855 - AO356_01685 0.78 -0.8 379,855 - AO356_01685 0.78 +0.7 380,233 - -0.7 380,233 - +0.6 380,233 - +0.9 380,237 + -0.4 380,237 + -1.6 380,323 + -0.1 380,323 + -1.1 380,323 + +0.4 380,324 - -1.1 380,324 - -0.7 380,582 + AO356_01690 0.53 -0.1 380,583 - AO356_01690 0.53 -0.5 380,654 + AO356_01690 0.66 -0.4 380,654 + AO356_01690 0.66 -0.1 380,654 + AO356_01690 0.66 +0.1 380,654 + AO356_01690 0.66 -0.0 380,655 - AO356_01690 0.66 +0.3 380,655 - AO356_01690 0.66 -0.1 380,655 - AO356_01690 0.66 +0.8 380,790 - +0.1 380,790 - -1.1 380,790 - -0.8 380,966 - AO356_01695 0.13 -0.2 381,151 + AO356_01695 0.33 +0.3 381,232 + AO356_01695 0.42 +1.7 381,544 + AO356_01695 0.77 +0.8 381,789 + -0.1 381,789 + +0.3 381,789 + +0.9 381,790 - -1.1 381,790 - -1.2 381,943 + +0.4 381,943 + +0.7 381,944 - -0.8 382,178 - AO356_01700 0.12 -0.8 382,178 - AO356_01700 0.12 +0.2 382,516 + AO356_01700 0.28 +0.2 382,517 - AO356_01700 0.28 -0.6 382,681 + AO356_01700 0.36 -0.0 382,682 - AO356_01700 0.36 +0.2
Or see this region's nucleotide sequence