Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01315

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01310 and AO356_01315 are separated by 341 nucleotidesAO356_01315 and AO356_01320 are separated by 231 nucleotides AO356_01310: AO356_01310 - hypothetical protein, at 303,957 to 304,661 _01310 AO356_01315: AO356_01315 - aldose epimerase, at 305,003 to 306,154 _01315 AO356_01320: AO356_01320 - oxidoreductase, at 306,386 to 307,207 _01320 Position (kb) 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1at 304.237 kb on + strand, within AO356_01310at 304.237 kb on + strand, within AO356_01310at 304.237 kb on + strand, within AO356_01310at 304.238 kb on - strand, within AO356_01310at 304.238 kb on - strand, within AO356_01310at 304.238 kb on - strand, within AO356_01310at 304.238 kb on - strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.288 kb on + strand, within AO356_01310at 304.289 kb on - strand, within AO356_01310at 304.289 kb on - strand, within AO356_01310at 304.289 kb on - strand, within AO356_01310at 304.289 kb on - strand, within AO356_01310at 304.336 kb on + strand, within AO356_01310at 304.336 kb on + strand, within AO356_01310at 304.336 kb on + strand, within AO356_01310at 304.337 kb on - strand, within AO356_01310at 304.337 kb on - strand, within AO356_01310at 304.495 kb on + strand, within AO356_01310at 304.495 kb on + strand, within AO356_01310at 304.496 kb on - strand, within AO356_01310at 304.763 kb on + strandat 304.878 kb on + strandat 304.878 kb on + strandat 304.878 kb on + strandat 304.879 kb on - strandat 304.879 kb on - strandat 304.911 kb on - strandat 304.965 kb on + strandat 304.999 kb on + strandat 304.999 kb on + strandat 304.999 kb on + strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.000 kb on - strandat 305.142 kb on + strand, within AO356_01315at 305.183 kb on + strand, within AO356_01315at 305.183 kb on + strand, within AO356_01315at 305.183 kb on + strand, within AO356_01315at 305.183 kb on + strand, within AO356_01315at 305.184 kb on - strand, within AO356_01315at 305.184 kb on - strand, within AO356_01315at 305.184 kb on - strand, within AO356_01315at 305.184 kb on - strand, within AO356_01315at 305.291 kb on + strand, within AO356_01315at 305.291 kb on + strand, within AO356_01315at 305.292 kb on - strand, within AO356_01315at 305.483 kb on + strand, within AO356_01315at 305.483 kb on + strand, within AO356_01315at 305.483 kb on + strand, within AO356_01315at 305.483 kb on + strand, within AO356_01315at 305.484 kb on - strand, within AO356_01315at 305.484 kb on - strand, within AO356_01315at 305.484 kb on - strand, within AO356_01315at 305.540 kb on + strand, within AO356_01315at 305.540 kb on + strand, within AO356_01315at 305.540 kb on + strand, within AO356_01315at 305.576 kb on + strand, within AO356_01315at 305.627 kb on + strand, within AO356_01315at 305.627 kb on + strand, within AO356_01315at 305.627 kb on + strand, within AO356_01315at 305.627 kb on + strand, within AO356_01315at 305.627 kb on + strand, within AO356_01315at 305.628 kb on - strand, within AO356_01315at 305.628 kb on - strand, within AO356_01315at 305.661 kb on + strand, within AO356_01315at 305.661 kb on + strand, within AO356_01315at 305.696 kb on + strand, within AO356_01315at 305.696 kb on + strand, within AO356_01315at 305.697 kb on - strand, within AO356_01315at 305.697 kb on - strand, within AO356_01315at 305.697 kb on - strand, within AO356_01315at 305.794 kb on + strand, within AO356_01315at 305.795 kb on - strand, within AO356_01315at 305.906 kb on + strand, within AO356_01315at 305.906 kb on + strand, within AO356_01315at 305.906 kb on + strand, within AO356_01315at 305.907 kb on - strand, within AO356_01315at 305.907 kb on - strand, within AO356_01315at 305.907 kb on - strand, within AO356_01315at 305.907 kb on - strand, within AO356_01315at 305.939 kb on + strand, within AO356_01315at 305.940 kb on - strand, within AO356_01315at 305.940 kb on - strand, within AO356_01315at 305.940 kb on - strand, within AO356_01315at 305.967 kb on - strand, within AO356_01315at 305.967 kb on - strand, within AO356_01315at 306.057 kb on - strandat 306.116 kb on + strandat 306.117 kb on - strandat 306.152 kb on + strandat 306.152 kb on + strandat 306.153 kb on - strandat 306.153 kb on - strandat 306.153 kb on - strandat 306.345 kb on - strandat 306.381 kb on + strandat 306.539 kb on + strand, within AO356_01320at 306.539 kb on + strand, within AO356_01320at 306.540 kb on - strand, within AO356_01320at 306.540 kb on - strand, within AO356_01320at 306.540 kb on - strand, within AO356_01320at 306.540 kb on - strand, within AO356_01320at 306.621 kb on - strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.704 kb on + strand, within AO356_01320at 306.705 kb on - strand, within AO356_01320at 306.705 kb on - strand, within AO356_01320at 306.705 kb on - strand, within AO356_01320at 306.729 kb on - strand, within AO356_01320at 306.729 kb on - strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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304,237 + AO356_01310 0.40 +1.2
304,237 + AO356_01310 0.40 -0.3
304,237 + AO356_01310 0.40 +0.4
304,238 - AO356_01310 0.40 -0.5
304,238 - AO356_01310 0.40 +0.4
304,238 - AO356_01310 0.40 +0.0
304,238 - AO356_01310 0.40 +1.2
304,288 + AO356_01310 0.47 +1.1
304,288 + AO356_01310 0.47 -0.1
304,288 + AO356_01310 0.47 +0.9
304,288 + AO356_01310 0.47 +0.4
304,288 + AO356_01310 0.47 +1.1
304,288 + AO356_01310 0.47 -0.6
304,288 + AO356_01310 0.47 -0.1
304,288 + AO356_01310 0.47 -0.8
304,288 + AO356_01310 0.47 +0.1
304,288 + AO356_01310 0.47 +1.0
304,289 - AO356_01310 0.47 -0.5
304,289 - AO356_01310 0.47 +0.3
304,289 - AO356_01310 0.47 +0.6
304,289 - AO356_01310 0.47 -0.3
304,336 + AO356_01310 0.54 -0.9
304,336 + AO356_01310 0.54 +0.0
304,336 + AO356_01310 0.54 -0.7
304,337 - AO356_01310 0.54 -0.1
304,337 - AO356_01310 0.54 -1.1
304,495 + AO356_01310 0.76 +0.9
304,495 + AO356_01310 0.76 +1.0
304,496 - AO356_01310 0.76 -0.1
304,763 + +0.0
304,878 + +0.5
304,878 + -0.0
304,878 + +0.2
304,879 - +0.0
304,879 - +0.9
304,911 - +0.4
304,965 + +0.2
304,999 + -0.8
304,999 + +0.5
304,999 + -0.3
305,000 - +0.6
305,000 - +0.6
305,000 - +0.5
305,000 - +1.3
305,000 - +1.6
305,000 - +0.8
305,000 - +0.7
305,000 - -0.0
305,000 - +0.9
305,000 - -0.2
305,000 - +0.1
305,000 - +0.6
305,142 + AO356_01315 0.12 -2.1
305,183 + AO356_01315 0.16 -1.6
305,183 + AO356_01315 0.16 -0.8
305,183 + AO356_01315 0.16 -1.8
305,183 + AO356_01315 0.16 -0.4
305,184 - AO356_01315 0.16 -1.1
305,184 - AO356_01315 0.16 -1.3
305,184 - AO356_01315 0.16 +0.1
305,184 - AO356_01315 0.16 -0.8
305,291 + AO356_01315 0.25 -2.1
305,291 + AO356_01315 0.25 -1.8
305,292 - AO356_01315 0.25 -1.8
305,483 + AO356_01315 0.42 -0.7
305,483 + AO356_01315 0.42 -2.5
305,483 + AO356_01315 0.42 -1.5
305,483 + AO356_01315 0.42 -1.7
305,484 - AO356_01315 0.42 -0.7
305,484 - AO356_01315 0.42 -1.0
305,484 - AO356_01315 0.42 -1.3
305,540 + AO356_01315 0.47 -0.2
305,540 + AO356_01315 0.47 -1.7
305,540 + AO356_01315 0.47 -2.9
305,576 + AO356_01315 0.50 -1.8
305,627 + AO356_01315 0.54 -1.8
305,627 + AO356_01315 0.54 -0.3
305,627 + AO356_01315 0.54 -1.3
305,627 + AO356_01315 0.54 -0.2
305,627 + AO356_01315 0.54 -2.0
305,628 - AO356_01315 0.54 -3.3
305,628 - AO356_01315 0.54 -1.8
305,661 + AO356_01315 0.57 -1.5
305,661 + AO356_01315 0.57 +0.3
305,696 + AO356_01315 0.60 -2.8
305,696 + AO356_01315 0.60 -1.8
305,697 - AO356_01315 0.60 -1.7
305,697 - AO356_01315 0.60 -2.6
305,697 - AO356_01315 0.60 -2.3
305,794 + AO356_01315 0.69 -2.8
305,795 - AO356_01315 0.69 -0.6
305,906 + AO356_01315 0.78 -2.0
305,906 + AO356_01315 0.78 -1.0
305,906 + AO356_01315 0.78 -2.0
305,907 - AO356_01315 0.78 -3.4
305,907 - AO356_01315 0.78 -1.1
305,907 - AO356_01315 0.78 -0.9
305,907 - AO356_01315 0.78 -2.4
305,939 + AO356_01315 0.81 -1.5
305,940 - AO356_01315 0.81 -1.0
305,940 - AO356_01315 0.81 +0.2
305,940 - AO356_01315 0.81 -2.0
305,967 - AO356_01315 0.84 +1.3
305,967 - AO356_01315 0.84 -1.9
306,057 - -0.0
306,116 + +0.3
306,117 - -1.5
306,152 + +0.2
306,152 + -0.4
306,153 - -0.6
306,153 - -0.7
306,153 - -0.0
306,345 - -0.9
306,381 + +0.4
306,539 + AO356_01320 0.19 +1.0
306,539 + AO356_01320 0.19 -0.3
306,540 - AO356_01320 0.19 -1.3
306,540 - AO356_01320 0.19 -1.1
306,540 - AO356_01320 0.19 -0.2
306,540 - AO356_01320 0.19 -1.5
306,621 - AO356_01320 0.29 -1.0
306,702 + AO356_01320 0.38 -0.8
306,702 + AO356_01320 0.38 +0.1
306,702 + AO356_01320 0.38 +0.1
306,702 + AO356_01320 0.38 +0.0
306,702 + AO356_01320 0.38 -0.5
306,702 + AO356_01320 0.38 -0.2
306,702 + AO356_01320 0.38 -0.2
306,702 + AO356_01320 0.38 +0.3
306,702 + AO356_01320 0.38 +0.6
306,703 - AO356_01320 0.39 -0.7
306,703 - AO356_01320 0.39 -0.5
306,703 - AO356_01320 0.39 +0.1
306,703 - AO356_01320 0.39 -0.8
306,703 - AO356_01320 0.39 -1.0
306,703 - AO356_01320 0.39 -0.0
306,703 - AO356_01320 0.39 +0.1
306,704 + AO356_01320 0.39 +1.0
306,705 - AO356_01320 0.39 -0.8
306,705 - AO356_01320 0.39 +0.1
306,705 - AO356_01320 0.39 +1.7
306,729 - AO356_01320 0.42 +0.5
306,729 - AO356_01320 0.42 +0.1
306,866 + AO356_01320 0.58 -0.0
306,866 + AO356_01320 0.58 -0.8
306,866 + AO356_01320 0.58 -0.3
306,866 + AO356_01320 0.58 +0.2
306,866 + AO356_01320 0.58 -0.0
306,866 + AO356_01320 0.58 -0.3

Or see this region's nucleotide sequence