Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00320

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00315 and AO356_00320 are separated by 111 nucleotidesAO356_00320 and AO356_00325 are separated by 145 nucleotides AO356_00315: AO356_00315 - nucleotidyltransferase, at 58,104 to 59,387 _00315 AO356_00320: AO356_00320 - hypothetical protein, at 59,499 to 60,803 _00320 AO356_00325: AO356_00325 - RNA helicase, at 60,949 to 63,414 _00325 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.506 kb on + strand, within AO356_00315at 58.506 kb on + strand, within AO356_00315at 58.506 kb on + strand, within AO356_00315at 58.506 kb on + strand, within AO356_00315at 58.506 kb on + strand, within AO356_00315at 58.507 kb on - strand, within AO356_00315at 58.507 kb on - strand, within AO356_00315at 58.507 kb on - strand, within AO356_00315at 58.507 kb on - strand, within AO356_00315at 58.507 kb on - strand, within AO356_00315at 58.507 kb on - strand, within AO356_00315at 58.507 kb on - strand, within AO356_00315at 58.507 kb on - strand, within AO356_00315at 58.512 kb on + strand, within AO356_00315at 58.693 kb on - strand, within AO356_00315at 58.719 kb on + strand, within AO356_00315at 58.773 kb on + strand, within AO356_00315at 58.774 kb on - strand, within AO356_00315at 58.847 kb on + strand, within AO356_00315at 58.847 kb on + strand, within AO356_00315at 58.886 kb on - strand, within AO356_00315at 58.886 kb on - strand, within AO356_00315at 58.931 kb on + strand, within AO356_00315at 58.959 kb on + strand, within AO356_00315at 58.959 kb on + strand, within AO356_00315at 58.959 kb on + strand, within AO356_00315at 58.960 kb on - strand, within AO356_00315at 59.123 kb on + strand, within AO356_00315at 59.123 kb on + strand, within AO356_00315at 59.123 kb on + strand, within AO356_00315at 59.123 kb on + strand, within AO356_00315at 59.123 kb on + strand, within AO356_00315at 59.123 kb on + strand, within AO356_00315at 59.128 kb on - strand, within AO356_00315at 59.192 kb on + strand, within AO356_00315at 59.319 kb on + strandat 59.319 kb on + strandat 59.319 kb on + strandat 59.320 kb on - strandat 59.320 kb on - strandat 59.320 kb on - strandat 59.320 kb on - strandat 59.389 kb on + strandat 59.389 kb on + strandat 59.390 kb on - strandat 59.390 kb on - strandat 59.390 kb on - strandat 59.413 kb on - strandat 59.413 kb on - strandat 59.447 kb on - strandat 59.508 kb on + strandat 59.508 kb on + strandat 59.508 kb on + strandat 59.508 kb on + strandat 59.533 kb on + strandat 59.533 kb on + strandat 59.593 kb on - strandat 59.617 kb on + strandat 59.700 kb on + strand, within AO356_00320at 59.700 kb on + strand, within AO356_00320at 59.700 kb on + strand, within AO356_00320at 59.700 kb on + strand, within AO356_00320at 59.700 kb on + strand, within AO356_00320at 59.700 kb on + strand, within AO356_00320at 59.773 kb on - strand, within AO356_00320at 59.801 kb on - strand, within AO356_00320at 59.827 kb on - strand, within AO356_00320at 59.904 kb on + strand, within AO356_00320at 59.904 kb on + strand, within AO356_00320at 59.934 kb on + strand, within AO356_00320at 59.934 kb on + strand, within AO356_00320at 59.934 kb on + strand, within AO356_00320at 59.934 kb on + strand, within AO356_00320at 59.934 kb on + strand, within AO356_00320at 59.934 kb on + strand, within AO356_00320at 59.935 kb on - strand, within AO356_00320at 59.935 kb on - strand, within AO356_00320at 59.935 kb on - strand, within AO356_00320at 59.935 kb on - strand, within AO356_00320at 59.935 kb on - strand, within AO356_00320at 59.935 kb on - strand, within AO356_00320at 59.945 kb on + strand, within AO356_00320at 59.945 kb on + strand, within AO356_00320at 59.946 kb on - strand, within AO356_00320at 59.966 kb on - strand, within AO356_00320at 59.966 kb on - strand, within AO356_00320at 59.966 kb on - strand, within AO356_00320at 59.966 kb on - strand, within AO356_00320at 59.984 kb on + strand, within AO356_00320at 60.117 kb on + strand, within AO356_00320at 60.118 kb on - strand, within AO356_00320at 60.184 kb on + strand, within AO356_00320at 60.184 kb on + strand, within AO356_00320at 60.185 kb on - strand, within AO356_00320at 60.203 kb on - strand, within AO356_00320at 60.279 kb on + strand, within AO356_00320at 60.279 kb on + strand, within AO356_00320at 60.280 kb on - strand, within AO356_00320at 60.325 kb on - strand, within AO356_00320at 60.325 kb on - strand, within AO356_00320at 60.415 kb on - strand, within AO356_00320at 60.415 kb on - strand, within AO356_00320at 60.415 kb on - strand, within AO356_00320at 60.415 kb on - strand, within AO356_00320at 60.466 kb on + strand, within AO356_00320at 60.467 kb on - strand, within AO356_00320at 60.467 kb on - strand, within AO356_00320at 60.488 kb on - strand, within AO356_00320at 60.488 kb on - strand, within AO356_00320at 60.488 kb on - strand, within AO356_00320at 60.584 kb on - strand, within AO356_00320at 60.584 kb on - strand, within AO356_00320at 60.836 kb on + strandat 60.836 kb on + strandat 60.837 kb on - strandat 60.837 kb on - strandat 60.837 kb on - strandat 60.906 kb on - strandat 61.115 kb on + strandat 61.116 kb on - strandat 61.160 kb on + strandat 61.160 kb on + strandat 61.161 kb on - strandat 61.161 kb on - strandat 61.176 kb on - strandat 61.176 kb on - strandat 61.281 kb on + strand, within AO356_00325at 61.281 kb on + strand, within AO356_00325at 61.282 kb on - strand, within AO356_00325at 61.282 kb on - strand, within AO356_00325at 61.284 kb on + strand, within AO356_00325at 61.284 kb on + strand, within AO356_00325at 61.285 kb on - strand, within AO356_00325at 61.285 kb on - strand, within AO356_00325at 61.285 kb on - strand, within AO356_00325at 61.351 kb on - strand, within AO356_00325at 61.412 kb on + strand, within AO356_00325at 61.641 kb on + strand, within AO356_00325at 61.714 kb on - strand, within AO356_00325at 61.718 kb on + strand, within AO356_00325

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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58,506 + AO356_00315 0.31 -0.3
58,506 + AO356_00315 0.31 +0.5
58,506 + AO356_00315 0.31 +0.3
58,506 + AO356_00315 0.31 -0.1
58,506 + AO356_00315 0.31 +0.3
58,507 - AO356_00315 0.31 -1.1
58,507 - AO356_00315 0.31 -0.7
58,507 - AO356_00315 0.31 +2.7
58,507 - AO356_00315 0.31 -0.2
58,507 - AO356_00315 0.31 +1.0
58,507 - AO356_00315 0.31 -0.2
58,507 - AO356_00315 0.31 -0.2
58,507 - AO356_00315 0.31 -0.5
58,512 + AO356_00315 0.32 -0.2
58,693 - AO356_00315 0.46 +0.5
58,719 + AO356_00315 0.48 +0.3
58,773 + AO356_00315 0.52 -0.8
58,774 - AO356_00315 0.52 -0.0
58,847 + AO356_00315 0.58 -1.0
58,847 + AO356_00315 0.58 +0.4
58,886 - AO356_00315 0.61 -0.2
58,886 - AO356_00315 0.61 +0.3
58,931 + AO356_00315 0.64 +0.8
58,959 + AO356_00315 0.67 -0.4
58,959 + AO356_00315 0.67 -1.0
58,959 + AO356_00315 0.67 +0.2
58,960 - AO356_00315 0.67 -0.5
59,123 + AO356_00315 0.79 +0.7
59,123 + AO356_00315 0.79 +0.9
59,123 + AO356_00315 0.79 -0.4
59,123 + AO356_00315 0.79 +0.3
59,123 + AO356_00315 0.79 +0.3
59,123 + AO356_00315 0.79 +1.2
59,128 - AO356_00315 0.80 -0.5
59,192 + AO356_00315 0.85 -1.2
59,319 + -0.7
59,319 + -0.2
59,319 + +0.2
59,320 - +0.7
59,320 - +0.1
59,320 - +0.8
59,320 - +0.3
59,389 + +0.9
59,389 + +0.6
59,390 - -0.0
59,390 - +0.6
59,390 - -0.1
59,413 - -1.3
59,413 - +0.8
59,447 - -0.5
59,508 + +1.1
59,508 + +0.1
59,508 + -0.2
59,508 + +0.3
59,533 + -1.2
59,533 + -0.0
59,593 - +1.1
59,617 + -0.4
59,700 + AO356_00320 0.15 -0.4
59,700 + AO356_00320 0.15 -0.1
59,700 + AO356_00320 0.15 +0.5
59,700 + AO356_00320 0.15 -0.3
59,700 + AO356_00320 0.15 -0.5
59,700 + AO356_00320 0.15 -0.7
59,773 - AO356_00320 0.21 +0.5
59,801 - AO356_00320 0.23 +0.1
59,827 - AO356_00320 0.25 +1.1
59,904 + AO356_00320 0.31 +0.1
59,904 + AO356_00320 0.31 -0.8
59,934 + AO356_00320 0.33 -0.7
59,934 + AO356_00320 0.33 +0.5
59,934 + AO356_00320 0.33 +0.3
59,934 + AO356_00320 0.33 -0.5
59,934 + AO356_00320 0.33 -0.4
59,934 + AO356_00320 0.33 -0.0
59,935 - AO356_00320 0.33 -0.2
59,935 - AO356_00320 0.33 +0.6
59,935 - AO356_00320 0.33 -0.7
59,935 - AO356_00320 0.33 -1.7
59,935 - AO356_00320 0.33 +0.4
59,935 - AO356_00320 0.33 -0.2
59,945 + AO356_00320 0.34 +1.3
59,945 + AO356_00320 0.34 +0.5
59,946 - AO356_00320 0.34 +0.6
59,966 - AO356_00320 0.36 -0.2
59,966 - AO356_00320 0.36 -0.0
59,966 - AO356_00320 0.36 -1.1
59,966 - AO356_00320 0.36 -0.0
59,984 + AO356_00320 0.37 +0.9
60,117 + AO356_00320 0.47 -0.6
60,118 - AO356_00320 0.47 -0.1
60,184 + AO356_00320 0.52 -0.5
60,184 + AO356_00320 0.52 +0.2
60,185 - AO356_00320 0.53 -0.5
60,203 - AO356_00320 0.54 -0.5
60,279 + AO356_00320 0.60 +1.0
60,279 + AO356_00320 0.60 +0.2
60,280 - AO356_00320 0.60 -1.1
60,325 - AO356_00320 0.63 -1.2
60,325 - AO356_00320 0.63 +0.0
60,415 - AO356_00320 0.70 -2.1
60,415 - AO356_00320 0.70 -0.9
60,415 - AO356_00320 0.70 -0.3
60,415 - AO356_00320 0.70 -0.7
60,466 + AO356_00320 0.74 +0.1
60,467 - AO356_00320 0.74 +0.7
60,467 - AO356_00320 0.74 +0.6
60,488 - AO356_00320 0.76 +0.1
60,488 - AO356_00320 0.76 +0.2
60,488 - AO356_00320 0.76 -1.0
60,584 - AO356_00320 0.83 +0.3
60,584 - AO356_00320 0.83 +0.9
60,836 + +0.1
60,836 + +0.8
60,837 - +0.3
60,837 - +0.7
60,837 - +0.8
60,906 - -0.8
61,115 + +0.5
61,116 - -1.2
61,160 + +0.2
61,160 + +1.0
61,161 - -0.7
61,161 - -0.1
61,176 - +0.6
61,176 - +0.3
61,281 + AO356_00325 0.13 -0.3
61,281 + AO356_00325 0.13 -0.7
61,282 - AO356_00325 0.14 +0.9
61,282 - AO356_00325 0.14 -0.4
61,284 + AO356_00325 0.14 -0.4
61,284 + AO356_00325 0.14 -0.8
61,285 - AO356_00325 0.14 +0.2
61,285 - AO356_00325 0.14 -0.8
61,285 - AO356_00325 0.14 -0.5
61,351 - AO356_00325 0.16 +0.3
61,412 + AO356_00325 0.19 -1.1
61,641 + AO356_00325 0.28 +0.0
61,714 - AO356_00325 0.31 +1.1
61,718 + AO356_00325 0.31 -1.2

Or see this region's nucleotide sequence