Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003293

Experiment: D-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Arabinose (C)
3,710,997	+		ABIE53_003292	0.45	-1.4
3,711,171	+		ABIE53_003292	0.56	-2.4
3,711,171	+		ABIE53_003292	0.56	+0.2
3,711,171	+		ABIE53_003292	0.56	-1.0
3,711,171	+		ABIE53_003292	0.56	-0.9
3,711,171	+		ABIE53_003292	0.56	-1.4
3,711,172	-		ABIE53_003292	0.56	-3.8
3,711,172	-		ABIE53_003292	0.56	-1.5
3,711,172	-		ABIE53_003292	0.56	-0.2
3,711,172	-		ABIE53_003292	0.56	-0.9
3,711,297	+		ABIE53_003292	0.64	-1.0
3,711,297	+		ABIE53_003292	0.64	-2.5
3,711,298	-		ABIE53_003292	0.64	-1.8
3,711,298	-		ABIE53_003292	0.64	-2.7
3,711,298	-		ABIE53_003292	0.64	+0.2
3,711,298	-		ABIE53_003292	0.64	+0.2
3,711,298	-		ABIE53_003292	0.64	-3.2
3,711,298	-		ABIE53_003292	0.64	-2.3
3,711,299	+		ABIE53_003292	0.64	-3.1
3,711,299	+		ABIE53_003292	0.64	-0.6
3,711,299	+		ABIE53_003292	0.64	-0.6
3,711,299	+		ABIE53_003292	0.64	-1.0
3,711,299	+		ABIE53_003292	0.64	-1.3
3,711,299	+		ABIE53_003292	0.64	+0.2
3,711,299	+		ABIE53_003292	0.64	-0.8
3,711,299	+		ABIE53_003292	0.64	-1.0
3,711,299	+		ABIE53_003292	0.64	-0.6
3,711,299	+		ABIE53_003292	0.64	-1.8
3,711,299	+		ABIE53_003292	0.64	-2.6
3,711,299	+		ABIE53_003292	0.64	-1.0
3,711,299	+		ABIE53_003292	0.64	+0.7
3,711,299	+		ABIE53_003292	0.64	-0.6
3,711,299	+		ABIE53_003292	0.64	-2.0
3,711,299	+		ABIE53_003292	0.64	-1.1
3,711,299	+		ABIE53_003292	0.64	-0.3
3,711,300	-		ABIE53_003292	0.64	-1.5
3,711,300	-		ABIE53_003292	0.64	-2.8
3,711,300	-		ABIE53_003292	0.64	+0.2
3,711,300	-		ABIE53_003292	0.64	-1.5
3,711,300	-		ABIE53_003292	0.64	+0.2
3,711,300	-		ABIE53_003292	0.64	-1.1
3,711,300	-		ABIE53_003292	0.64	-1.7
3,711,300	-		ABIE53_003292	0.64	-0.8
3,711,300	-		ABIE53_003292	0.64	-2.8
3,711,300	-		ABIE53_003292	0.64	-1.8
3,711,300	-		ABIE53_003292	0.64	-1.3
3,711,300	-		ABIE53_003292	0.64	-1.7
3,711,300	-		ABIE53_003292	0.64	-0.7
3,711,300	-		ABIE53_003292	0.64	-0.7
3,711,300	-		ABIE53_003292	0.64	-0.8
3,711,300	-		ABIE53_003292	0.64	-1.2
3,711,300	-		ABIE53_003292	0.64	-0.6
3,711,300	-		ABIE53_003292	0.64	-2.9
3,711,354	+		ABIE53_003292	0.68	-2.0
3,711,354	+		ABIE53_003292	0.68	-1.1
3,711,354	+		ABIE53_003292	0.68	+1.7
3,711,354	+		ABIE53_003292	0.68	-1.1
3,711,354	+		ABIE53_003292	0.68	+0.2
3,711,355	-		ABIE53_003292	0.68	-0.8
3,711,355	-		ABIE53_003292	0.68	+0.2
3,711,355	-		ABIE53_003292	0.68	-1.7
3,711,355	-		ABIE53_003292	0.68	-1.3
3,711,355	-		ABIE53_003292	0.68	-3.6
3,711,355	-		ABIE53_003292	0.68	+0.4
3,711,355	-		ABIE53_003292	0.68	+0.2
3,711,355	-		ABIE53_003292	0.68	-1.6
3,711,476	+		ABIE53_003292	0.75	-1.4
3,711,476	+		ABIE53_003292	0.75	-1.5
3,711,477	-		ABIE53_003292	0.75	+3.1
3,711,591	+		ABIE53_003292	0.83	-1.8
3,711,591	+		ABIE53_003292	0.83	-2.5
3,711,591	+		ABIE53_003292	0.83	-1.6
3,711,591	+		ABIE53_003292	0.83	+0.4
3,711,591	+		ABIE53_003292	0.83	-1.5
3,711,591	+		ABIE53_003292	0.83	-1.3
3,711,591	+		ABIE53_003292	0.83	+0.7
3,711,592	-		ABIE53_003292	0.83	-0.8
3,711,592	-		ABIE53_003292	0.83	-1.7
3,711,592	-		ABIE53_003292	0.83	-2.4
3,711,592	-		ABIE53_003292	0.83	-1.6
3,711,592	-		ABIE53_003292	0.83	-2.5
3,711,592	-		ABIE53_003292	0.83	-0.6
3,711,592	-		ABIE53_003292	0.83	+0.3
3,711,672	+		ABIE53_003292	0.88	-0.3
3,711,672	+		ABIE53_003292	0.88	-0.6
3,711,672	+		ABIE53_003292	0.88	-1.6
3,711,672	+		ABIE53_003292	0.88	-1.5
3,711,672	+		ABIE53_003292	0.88	-0.8
3,711,673	-		ABIE53_003292	0.88	-2.0
3,711,673	-		ABIE53_003292	0.88	-1.4
3,711,673	-		ABIE53_003292	0.88	-2.2
3,711,673	-		ABIE53_003292	0.88	-0.8
3,711,673	-		ABIE53_003292	0.88	-1.6
3,711,675	+		ABIE53_003292	0.88	-1.6
3,711,675	+		ABIE53_003292	0.88	-1.6
3,711,675	+		ABIE53_003292	0.88	-3.0
3,711,675	+		ABIE53_003292	0.88	-0.8
3,711,675	+		ABIE53_003292	0.88	-1.1
3,711,676	-		ABIE53_003292	0.88	-1.3
3,711,676	-		ABIE53_003292	0.88	-2.1
3,711,739	+				-1.0
3,711,740	-				-0.4
3,711,846	+				+0.5
3,711,847	-				-2.1
3,711,847	-				-0.4
3,711,847	-				+0.0
3,711,847	-				+0.7
3,711,847	-				-0.3
3,711,847	-				+0.4
3,711,934	-				+0.0
3,711,934	-				-1.5
3,712,306	+		ABIE53_003293	0.38	-1.3
3,712,307	-		ABIE53_003293	0.38	-0.3
3,712,307	-		ABIE53_003293	0.38	-0.4
3,712,307	-		ABIE53_003293	0.38	-0.6
3,712,307	-		ABIE53_003293	0.38	-1.1
3,712,307	-		ABIE53_003293	0.38	+0.2
3,712,351	+		ABIE53_003293	0.43	-2.6
3,712,412	+		ABIE53_003293	0.50	+0.7
3,712,412	+		ABIE53_003293	0.50	-0.9
3,712,413	-		ABIE53_003293	0.50	-2.7
3,712,413	-		ABIE53_003293	0.50	-1.0
3,712,432	+		ABIE53_003293	0.52	-1.1
3,712,432	+		ABIE53_003293	0.52	-0.8
3,712,433	-		ABIE53_003293	0.52	-2.4
3,712,433	-		ABIE53_003293	0.52	-0.6
3,712,783	+		ABIE53_003293	0.89	-0.5
3,712,784	-		ABIE53_003293	0.90	-2.1
3,712,832	+				+0.7
3,712,833	-				-0.9
3,712,833	-				-0.8
3,712,833	-				-0.7
3,712,833	-				-0.8
3,712,834	+				-2.5
3,712,834	+				-2.5
3,712,835	-				-1.4
3,712,835	-				+0.0
3,712,891	+				-1.1
3,712,892	+				-1.3
3,712,892	+				-2.0
3,712,892	+				-0.1
3,712,892	+				-1.4
3,712,892	+				-2.6
3,712,892	+				+1.7
3,712,892	+				-0.1
3,712,893	-				-1.6
3,712,893	-				-1.7
3,712,893	-				-0.6
3,712,893	-				-0.9
3,712,893	-				-1.6
3,712,893	-				-1.7
3,712,893	-				-1.7
3,712,893	-				-1.6
3,712,893	-				-0.4
3,712,902	+				+0.4
3,712,902	+				-1.3
3,712,902	+				+1.7
3,712,902	+				-1.0
3,712,903	-				-3.3
3,712,903	-				-0.6
3,712,903	-				-1.1
3,712,903	-				-1.1
3,712,903	-				-0.1
3,713,008	+		ABIE53_003294	0.11	-0.7
3,713,008	+		ABIE53_003294	0.11	+0.7
3,713,008	+		ABIE53_003294	0.11	-3.0
3,713,008	+		ABIE53_003294	0.11	-2.8
3,713,008	+		ABIE53_003294	0.11	-1.6
3,713,009	-		ABIE53_003294	0.11	-0.3
3,713,009	-		ABIE53_003294	0.11	-2.2
3,713,009	-		ABIE53_003294	0.11	+1.7
3,713,009	-		ABIE53_003294	0.11	-1.4
3,713,009	-		ABIE53_003294	0.11	-3.0
3,713,428	+		ABIE53_003294	0.48	-0.3
3,713,428	+		ABIE53_003294	0.48	-2.8
3,713,428	+		ABIE53_003294	0.48	+0.2
3,713,428	+		ABIE53_003294	0.48	-0.6
3,713,428	+		ABIE53_003294	0.48	-0.8
3,713,429	-		ABIE53_003294	0.48	-0.6
3,713,429	-		ABIE53_003294	0.48	-2.7
3,713,429	-		ABIE53_003294	0.48	-0.3
3,713,429	-		ABIE53_003294	0.48	-1.8
3,713,429	-		ABIE53_003294	0.48	-1.8
3,713,429	-		ABIE53_003294	0.48	-2.2
3,713,429	-		ABIE53_003294	0.48	-3.0
3,713,430	+		ABIE53_003294	0.48	-0.3
3,713,430	+		ABIE53_003294	0.48	-1.1
3,713,430	+		ABIE53_003294	0.48	-0.1
3,713,430	+		ABIE53_003294	0.48	-1.1
3,713,430	+		ABIE53_003294	0.48	-2.1
3,713,430	+		ABIE53_003294	0.48	-0.4
3,713,430	+		ABIE53_003294	0.48	-0.3
3,713,430	+		ABIE53_003294	0.48	-1.3
3,713,430	+		ABIE53_003294	0.48	+1.7
3,713,430	+		ABIE53_003294	0.48	+0.4
3,713,430	+		ABIE53_003294	0.48	-2.6
3,713,430	+		ABIE53_003294	0.48	-1.1
3,713,430	+		ABIE53_003294	0.48	+0.7
3,713,431	-		ABIE53_003294	0.48	-1.4
3,713,431	-		ABIE53_003294	0.48	-2.1
3,713,431	-		ABIE53_003294	0.48	-0.6
3,713,431	-		ABIE53_003294	0.48	-0.3
3,713,431	-		ABIE53_003294	0.48	-2.7
3,713,431	-		ABIE53_003294	0.48	-1.9
3,713,431	-		ABIE53_003294	0.48	-2.7
3,713,431	-		ABIE53_003294	0.48	-1.1
3,713,565	+		ABIE53_003294	0.60	-0.8
3,713,565	+		ABIE53_003294	0.60	-2.4
3,713,565	+		ABIE53_003294	0.60	+0.9
3,713,565	+		ABIE53_003294	0.60	-0.9
3,713,566	-		ABIE53_003294	0.60	-2.1
3,713,566	-		ABIE53_003294	0.60	-2.3
3,713,566	-		ABIE53_003294	0.60	-1.9
3,713,566	-		ABIE53_003294	0.60	-1.8
3,713,566	-		ABIE53_003294	0.60	+0.3
3,713,566	-		ABIE53_003294	0.60	-1.6
3,713,566	-		ABIE53_003294	0.60	-1.7
3,713,566	-		ABIE53_003294	0.60	-2.1
3,713,647	+		ABIE53_003294	0.67	+0.7
3,713,647	+		ABIE53_003294	0.67	+0.2
3,713,648	-		ABIE53_003294	0.67	-3.3
3,713,648	-		ABIE53_003294	0.67	-1.6
3,713,648	-		ABIE53_003294	0.67	-1.0
3,713,835	+		ABIE53_003294	0.84	-1.1
3,713,835	+		ABIE53_003294	0.84	-0.4
3,713,835	+		ABIE53_003294	0.84	+1.7
3,713,835	+		ABIE53_003294	0.84	-0.8
3,713,835	+		ABIE53_003294	0.84	-2.0
3,713,835	+		ABIE53_003294	0.84	-3.3
3,713,835	+		ABIE53_003294	0.84	+0.4
3,713,835	+		ABIE53_003294	0.84	-1.1
3,713,835	+		ABIE53_003294	0.84	-1.6
3,713,835	+		ABIE53_003294	0.84	-1.2
3,713,835	+		ABIE53_003294	0.84	-0.6
3,713,835	+		ABIE53_003294	0.84	+0.4
3,713,835	+		ABIE53_003294	0.84	-0.6
3,713,835	+		ABIE53_003294	0.84	-1.8
3,713,835	+		ABIE53_003294	0.84	-1.6
3,713,835	+		ABIE53_003294	0.84	-2.3
3,713,835	+		ABIE53_003294	0.84	-1.1
3,713,835	+		ABIE53_003294	0.84	-0.3
3,713,836	-		ABIE53_003294	0.84	-3.2
3,713,836	-		ABIE53_003294	0.84	-1.5
3,713,836	-		ABIE53_003294	0.84	-1.6
3,713,836	-		ABIE53_003294	0.84	+0.3
3,713,836	-		ABIE53_003294	0.84	+1.7
3,713,836	-		ABIE53_003294	0.84	-2.4
3,713,836	-		ABIE53_003294	0.84	-0.6
3,713,836	-		ABIE53_003294	0.84	-3.3
3,713,836	-		ABIE53_003294	0.84	-1.4
3,713,836	-		ABIE53_003294	0.84	+0.8
3,713,836	-		ABIE53_003294	0.84	-0.6
3,713,836	-		ABIE53_003294	0.84	-1.1
3,713,836	-		ABIE53_003294	0.84	-1.7
3,713,836	-		ABIE53_003294	0.84	-2.9
3,713,836	-		ABIE53_003294	0.84	-0.4
3,713,836	-		ABIE53_003294	0.84	-3.3
3,713,836	-		ABIE53_003294	0.84	-2.3
3,713,836	-		ABIE53_003294	0.84	-3.3
3,713,836	-		ABIE53_003294	0.84	-1.3
3,713,838	+		ABIE53_003294	0.84	-0.3
3,713,838	+		ABIE53_003294	0.84	-2.6
3,713,838	+		ABIE53_003294	0.84	+0.2
3,713,838	+		ABIE53_003294	0.84	-1.3
3,713,838	+		ABIE53_003294	0.84	-1.6
3,713,838	+		ABIE53_003294	0.84	-4.1
3,713,838	+		ABIE53_003294	0.84	-2.8
3,713,838	+		ABIE53_003294	0.84	+0.3
3,713,839	-		ABIE53_003294	0.84	-1.5
3,713,839	-		ABIE53_003294	0.84	+0.2
3,713,839	-		ABIE53_003294	0.84	-1.0
3,713,839	-		ABIE53_003294	0.84	-1.3
3,713,839	-		ABIE53_003294	0.84	+0.7
3,713,839	-		ABIE53_003294	0.84	-2.2
3,713,839	-		ABIE53_003294	0.84	-1.6
3,713,839	-		ABIE53_003294	0.84	-2.2
3,713,839	-		ABIE53_003294	0.84	+0.2