Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000426

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000425 and ABIE53_000426 are separated by 90 nucleotidesABIE53_000426 and ABIE53_000427 are separated by 72 nucleotidesABIE53_000427 and ABIE53_000428 are separated by 57 nucleotides ABIE53_000425: ABIE53_000425 - 23S rRNA (cytosine1962-C5)-methyltransferase, at 460,348 to 461,550 _000425 ABIE53_000426: ABIE53_000426 - integrase/recombinase XerC, at 461,641 to 462,564 _000426 ABIE53_000427: ABIE53_000427 - uncharacterized protein YigA (DUF484 family), at 462,637 to 463,392 _000427 ABIE53_000428: ABIE53_000428 - diaminopimelate epimerase, at 463,450 to 464,352 _000428 Position (kb) 461 462 463Strain fitness (log2 ratio) -2 -1 0 1 2at 460.676 kb on + strand, within ABIE53_000425at 460.850 kb on + strand, within ABIE53_000425at 460.850 kb on + strand, within ABIE53_000425at 460.851 kb on - strand, within ABIE53_000425at 460.851 kb on - strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.926 kb on - strand, within ABIE53_000425at 460.926 kb on - strand, within ABIE53_000425at 460.926 kb on - strand, within ABIE53_000425at 460.926 kb on - strand, within ABIE53_000425at 460.965 kb on - strand, within ABIE53_000425at 461.038 kb on + strand, within ABIE53_000425at 461.038 kb on + strand, within ABIE53_000425at 461.039 kb on - strand, within ABIE53_000425at 461.039 kb on - strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.202 kb on - strand, within ABIE53_000425at 461.202 kb on - strand, within ABIE53_000425at 461.202 kb on - strand, within ABIE53_000425at 461.202 kb on - strand, within ABIE53_000425at 461.486 kb on + strandat 461.486 kb on + strandat 461.486 kb on + strandat 461.487 kb on - strandat 461.487 kb on - strandat 461.487 kb on - strandat 461.487 kb on - strandat 461.539 kb on - strandat 461.544 kb on + strandat 461.544 kb on + strandat 461.544 kb on + strandat 461.545 kb on - strandat 461.620 kb on + strandat 461.621 kb on - strandat 461.621 kb on - strandat 461.621 kb on - strandat 461.678 kb on + strandat 461.714 kb on + strandat 461.714 kb on + strandat 461.714 kb on + strandat 461.715 kb on - strandat 462.326 kb on + strand, within ABIE53_000426at 462.327 kb on - strand, within ABIE53_000426at 462.411 kb on + strand, within ABIE53_000426at 462.536 kb on + strandat 462.536 kb on + strandat 462.536 kb on + strandat 462.537 kb on - strandat 462.537 kb on - strandat 462.537 kb on - strandat 462.927 kb on - strand, within ABIE53_000427at 462.998 kb on + strand, within ABIE53_000427at 462.999 kb on - strand, within ABIE53_000427at 462.999 kb on - strand, within ABIE53_000427at 463.089 kb on - strand, within ABIE53_000427at 463.332 kb on - strandat 463.332 kb on - strandat 463.332 kb on - strandat 463.375 kb on - strandat 463.375 kb on - strandat 463.375 kb on - strandat 463.414 kb on + strandat 463.414 kb on + strandat 463.414 kb on + strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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460,676 + ABIE53_000425 0.27 +1.0
460,850 + ABIE53_000425 0.42 -0.2
460,850 + ABIE53_000425 0.42 +0.2
460,851 - ABIE53_000425 0.42 -0.9
460,851 - ABIE53_000425 0.42 -1.2
460,925 + ABIE53_000425 0.48 -2.3
460,925 + ABIE53_000425 0.48 -0.3
460,925 + ABIE53_000425 0.48 +1.8
460,925 + ABIE53_000425 0.48 -0.0
460,925 + ABIE53_000425 0.48 -0.0
460,925 + ABIE53_000425 0.48 -1.9
460,925 + ABIE53_000425 0.48 -0.8
460,925 + ABIE53_000425 0.48 +0.0
460,926 - ABIE53_000425 0.48 +0.0
460,926 - ABIE53_000425 0.48 +0.3
460,926 - ABIE53_000425 0.48 -0.0
460,926 - ABIE53_000425 0.48 +1.3
460,965 - ABIE53_000425 0.51 +1.5
461,038 + ABIE53_000425 0.57 -1.2
461,038 + ABIE53_000425 0.57 +1.8
461,039 - ABIE53_000425 0.57 +1.2
461,039 - ABIE53_000425 0.57 +0.1
461,078 + ABIE53_000425 0.61 +0.0
461,078 + ABIE53_000425 0.61 +1.3
461,078 + ABIE53_000425 0.61 -1.5
461,078 + ABIE53_000425 0.61 -0.4
461,078 + ABIE53_000425 0.61 +0.3
461,201 + ABIE53_000425 0.71 -0.3
461,201 + ABIE53_000425 0.71 -1.5
461,201 + ABIE53_000425 0.71 +1.3
461,201 + ABIE53_000425 0.71 +0.1
461,201 + ABIE53_000425 0.71 -0.7
461,201 + ABIE53_000425 0.71 +0.4
461,201 + ABIE53_000425 0.71 +0.0
461,202 - ABIE53_000425 0.71 -1.6
461,202 - ABIE53_000425 0.71 +1.0
461,202 - ABIE53_000425 0.71 -0.2
461,202 - ABIE53_000425 0.71 -0.4
461,486 + -1.2
461,486 + -2.2
461,486 + -0.2
461,487 - +0.8
461,487 - +0.4
461,487 - +0.3
461,487 - +0.4
461,539 - +0.3
461,544 + -0.2
461,544 + -0.3
461,544 + +0.3
461,545 - +1.0
461,620 + -0.2
461,621 - +2.1
461,621 - -0.8
461,621 - +0.3
461,678 + -1.0
461,714 + -0.7
461,714 + -0.4
461,714 + -0.4
461,715 - -1.2
462,326 + ABIE53_000426 0.74 -1.7
462,327 - ABIE53_000426 0.74 +0.2
462,411 + ABIE53_000426 0.83 -0.8
462,536 + -0.0
462,536 + -0.2
462,536 + +0.4
462,537 - +0.3
462,537 - -0.0
462,537 - -1.4
462,927 - ABIE53_000427 0.38 -1.2
462,998 + ABIE53_000427 0.48 -0.6
462,999 - ABIE53_000427 0.48 -0.2
462,999 - ABIE53_000427 0.48 -0.6
463,089 - ABIE53_000427 0.60 -1.9
463,332 - -1.4
463,332 - -0.8
463,332 - -0.0
463,375 - -1.3
463,375 - +1.4
463,375 - -0.8
463,414 + +1.0
463,414 + -1.9
463,414 + -1.2
463,415 - -0.4
463,415 - -0.1
463,415 - -1.2
463,415 - -0.1
463,415 - +0.8
463,415 - -0.4

Or see this region's nucleotide sequence