Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04396 and SMc04397 are separated by 160 nucleotides SMc04397 and SMc04398 overlap by 7 nucleotides SMc04398 and SMc04399 overlap by 8 nucleotides
SMc04396: SMc04396 - periplasmic binding protein, at 3,599,785 to 3,601,029
SMc04396
SMc04397: SMc04397 - L-sorbosone dehydrogenase, NADP dependent protein, at 3,601,190 to 3,602,704
SMc04397
SMc04398: SMc04398 - enoyl-CoA hydratase, at 3,602,698 to 3,603,477
SMc04398
SMc04399: SMc04399 - acyl-COA transferase, at 3,603,470 to 3,605,092
SMc04399
Position (kb)
3601
3602
3603 Strain fitness (log2 ratio)
-2
-1
0
1 at 3600.326 kb on + strand at 3600.326 kb on + strand, within SMc04396 at 3600.327 kb on - strand, within SMc04396 at 3600.327 kb on - strand, within SMc04396 at 3600.651 kb on - strand, within SMc04396 at 3600.946 kb on + strand at 3600.946 kb on + strand at 3600.946 kb on + strand at 3601.122 kb on - strand at 3601.252 kb on + strand at 3601.254 kb on + strand at 3601.370 kb on + strand, within SMc04397 at 3601.611 kb on - strand, within SMc04397 at 3601.828 kb on - strand, within SMc04397 at 3602.222 kb on + strand, within SMc04397 at 3602.223 kb on - strand, within SMc04397 at 3602.261 kb on - strand, within SMc04397 at 3602.275 kb on + strand, within SMc04397 at 3602.276 kb on - strand, within SMc04397 at 3602.276 kb on - strand, within SMc04397 at 3602.276 kb on - strand, within SMc04397 at 3602.281 kb on - strand, within SMc04397 at 3602.320 kb on - strand, within SMc04397 at 3602.553 kb on + strand at 3603.246 kb on - strand, within SMc04398 at 3603.610 kb on + strand at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,600,326 + -1.0 3,600,326 + SMc04396 0.43 -0.2 3,600,327 - SMc04396 0.44 -0.8 3,600,327 - SMc04396 0.44 -0.7 3,600,651 - SMc04396 0.70 +0.9 3,600,946 + -0.7 3,600,946 + +0.6 3,600,946 + +0.6 3,601,122 - +0.7 3,601,252 + -0.0 3,601,254 + +1.7 3,601,370 + SMc04397 0.12 -0.4 3,601,611 - SMc04397 0.28 -0.5 3,601,828 - SMc04397 0.42 -0.3 3,602,222 + SMc04397 0.68 +0.0 3,602,223 - SMc04397 0.68 +0.4 3,602,261 - SMc04397 0.71 -0.2 3,602,275 + SMc04397 0.72 -0.6 3,602,276 - SMc04397 0.72 -2.4 3,602,276 - SMc04397 0.72 +0.3 3,602,276 - SMc04397 0.72 -1.1 3,602,281 - SMc04397 0.72 +0.6 3,602,320 - SMc04397 0.75 -0.2 3,602,553 + +0.3 3,603,246 - SMc04398 0.70 -1.0 3,603,610 + -0.1 3,603,696 + SMc04399 0.14 -0.3 3,603,696 + SMc04399 0.14 -0.7 3,603,696 + SMc04399 0.14 +0.3 3,603,696 + SMc04399 0.14 +0.0 3,603,696 + SMc04399 0.14 -0.3 3,603,697 - SMc04399 0.14 +0.7 3,603,697 - SMc04399 0.14 -0.4 3,603,697 - SMc04399 0.14 -0.1 3,603,697 - SMc04399 0.14 -0.3 3,603,697 - SMc04399 0.14 -0.0 3,603,697 - SMc04399 0.14 +1.2 3,603,697 - SMc04399 0.14 -0.2
Or see this region's nucleotide sequence