Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03793 and SMc03794 are separated by 121 nucleotides SMc03794 and SMc03795 are separated by 147 nucleotides SMc03795 and SMc03796 are separated by 8 nucleotides SMc03796 and SMc03797 are separated by 263 nucleotides
SMc03793: SMc03793 - citrate lyase subunit beta, at 3,459,158 to 3,460,060
SMc03793
SMc03794: SMc03794 - hypothetical protein, at 3,460,182 to 3,460,433
SMc03794
SMc03795: SMc03795 - isopropylmalate isomerase small subunit, at 3,460,581 to 3,461,186
SMc03795
SMc03796: SMc03796 - hypothetical protein, at 3,461,195 to 3,461,575
SMc03796
SMc03797: SMc03797 - homoserine O-succinyltransferase, at 3,461,839 to 3,462,834
SMc03797
Position (kb)
3460
3461
3462 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3459.740 kb on - strand, within SMc03793 at 3460.432 kb on - strand at 3460.457 kb on - strand at 3460.538 kb on + strand at 3460.723 kb on - strand, within SMc03795 at 3460.902 kb on + strand, within SMc03795 at 3461.148 kb on + strand at 3461.246 kb on + strand, within SMc03796 at 3461.300 kb on + strand, within SMc03796 at 3461.307 kb on - strand, within SMc03796 at 3461.307 kb on - strand, within SMc03796 at 3461.423 kb on + strand, within SMc03796 at 3461.424 kb on - strand, within SMc03796 at 3461.426 kb on + strand, within SMc03796 at 3461.426 kb on + strand, within SMc03796 at 3461.426 kb on + strand, within SMc03796 at 3461.427 kb on - strand, within SMc03796 at 3461.427 kb on - strand, within SMc03796 at 3461.921 kb on + strand at 3462.006 kb on - strand, within SMc03797 at 3462.006 kb on - strand, within SMc03797 at 3462.006 kb on - strand, within SMc03797 at 3462.173 kb on - strand, within SMc03797 at 3462.173 kb on - strand, within SMc03797 at 3462.173 kb on - strand, within SMc03797 at 3462.173 kb on - strand, within SMc03797
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,459,740 - SMc03793 0.64 -0.3 3,460,432 - -0.0 3,460,457 - -0.3 3,460,538 + -0.1 3,460,723 - SMc03795 0.23 -3.6 3,460,902 + SMc03795 0.53 -2.6 3,461,148 + -1.0 3,461,246 + SMc03796 0.13 +0.1 3,461,300 + SMc03796 0.28 +0.5 3,461,307 - SMc03796 0.29 -0.3 3,461,307 - SMc03796 0.29 -0.6 3,461,423 + SMc03796 0.60 +0.2 3,461,424 - SMc03796 0.60 +0.5 3,461,426 + SMc03796 0.61 +0.2 3,461,426 + SMc03796 0.61 -0.0 3,461,426 + SMc03796 0.61 -0.3 3,461,427 - SMc03796 0.61 -1.3 3,461,427 - SMc03796 0.61 +0.6 3,461,921 + -3.5 3,462,006 - SMc03797 0.17 -4.6 3,462,006 - SMc03797 0.17 -4.4 3,462,006 - SMc03797 0.17 -4.6 3,462,173 - SMc03797 0.34 -2.8 3,462,173 - SMc03797 0.34 -5.2 3,462,173 - SMc03797 0.34 -4.7 3,462,173 - SMc03797 0.34 -5.4
Or see this region's nucleotide sequence