Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02895 and SMc02896 are separated by 222 nucleotides SMc02896 and SMc02897 are separated by 171 nucleotides
SMc02895: SMc02895 - hypothetical protein, at 251,835 to 252,779
SMc02895
SMc02896: SMc02896 - branched-chain amino acid aminotransferase, at 253,002 to 254,099
SMc02896
SMc02897: SMc02897 - cytochrome C transmembrane protein, at 254,271 to 255,050
SMc02897
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1 at 252.039 kb on + strand, within SMc02895 at 252.040 kb on - strand, within SMc02895 at 252.163 kb on + strand, within SMc02895 at 252.505 kb on - strand, within SMc02895 at 252.505 kb on - strand, within SMc02895 at 252.758 kb on - strand at 252.766 kb on - strand at 252.766 kb on - strand at 252.766 kb on - strand at 253.156 kb on - strand, within SMc02896 at 253.234 kb on + strand, within SMc02896 at 253.235 kb on - strand, within SMc02896 at 253.262 kb on + strand, within SMc02896 at 253.474 kb on + strand, within SMc02896 at 253.474 kb on + strand, within SMc02896 at 253.542 kb on + strand, within SMc02896 at 253.543 kb on - strand, within SMc02896 at 253.543 kb on - strand, within SMc02896 at 253.547 kb on + strand, within SMc02896 at 253.603 kb on + strand, within SMc02896 at 253.604 kb on - strand, within SMc02896 at 253.604 kb on - strand, within SMc02896 at 253.609 kb on + strand, within SMc02896 at 253.609 kb on + strand, within SMc02896 at 253.669 kb on + strand, within SMc02896 at 253.670 kb on - strand, within SMc02896 at 253.850 kb on - strand, within SMc02896 at 253.859 kb on + strand, within SMc02896 at 253.860 kb on - strand, within SMc02896 at 253.860 kb on - strand, within SMc02896 at 253.883 kb on - strand, within SMc02896 at 254.148 kb on + strand at 254.148 kb on + strand at 254.148 kb on + strand at 254.148 kb on + strand at 254.149 kb on - strand at 254.149 kb on - strand at 254.172 kb on + strand at 254.172 kb on + strand at 254.173 kb on + strand at 254.173 kb on - strand at 254.173 kb on - strand at 254.173 kb on - strand at 254.173 kb on - strand at 254.174 kb on + strand at 254.174 kb on + strand at 254.175 kb on - strand at 254.175 kb on - strand at 254.175 kb on - strand at 254.175 kb on - strand at 254.635 kb on + strand, within SMc02897 at 254.636 kb on - strand, within SMc02897 at 254.650 kb on + strand, within SMc02897 at 254.651 kb on - strand, within SMc02897 at 255.040 kb on + strand at 255.041 kb on - strand at 255.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 252,039 + SMc02895 0.22 +0.0 252,040 - SMc02895 0.22 +0.6 252,163 + SMc02895 0.35 -0.2 252,505 - SMc02895 0.71 +0.1 252,505 - SMc02895 0.71 +0.1 252,758 - +0.4 252,766 - -0.6 252,766 - -0.8 252,766 - +1.1 253,156 - SMc02896 0.14 +0.0 253,234 + SMc02896 0.21 +0.4 253,235 - SMc02896 0.21 +1.4 253,262 + SMc02896 0.24 +0.2 253,474 + SMc02896 0.43 +0.4 253,474 + SMc02896 0.43 +0.8 253,542 + SMc02896 0.49 -0.1 253,543 - SMc02896 0.49 -0.2 253,543 - SMc02896 0.49 +0.8 253,547 + SMc02896 0.50 -0.2 253,603 + SMc02896 0.55 +0.2 253,604 - SMc02896 0.55 -0.7 253,604 - SMc02896 0.55 +0.6 253,609 + SMc02896 0.55 +0.1 253,609 + SMc02896 0.55 -1.0 253,669 + SMc02896 0.61 +0.2 253,670 - SMc02896 0.61 -0.5 253,850 - SMc02896 0.77 +0.1 253,859 + SMc02896 0.78 -0.2 253,860 - SMc02896 0.78 -0.1 253,860 - SMc02896 0.78 +0.5 253,883 - SMc02896 0.80 +0.3 254,148 + +0.1 254,148 + -1.6 254,148 + -2.1 254,148 + +0.6 254,149 - -0.2 254,149 - -0.2 254,172 + -0.1 254,172 + -0.1 254,173 + +0.4 254,173 - -0.0 254,173 - -0.2 254,173 - +0.4 254,173 - -0.1 254,174 + +0.1 254,174 + -2.4 254,175 - +0.4 254,175 - +0.0 254,175 - -0.9 254,175 - +0.6 254,635 + SMc02897 0.47 +0.2 254,636 - SMc02897 0.47 -0.0 254,650 + SMc02897 0.49 -0.1 254,651 - SMc02897 0.49 +0.6 255,040 + -1.0 255,041 - +0.7 255,041 - -1.6
Or see this region's nucleotide sequence