Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02612 and SMc02613 are separated by 81 nucleotides SMc02613 and SMc02614 are separated by 103 nucleotides SMc02614 and SMc02615 are separated by 24 nucleotides
SMc02612: SMc02612 - oxidoreductase, at 105,243 to 106,571
SMc02612
SMc02613: SMc02613 - glutamine synthetase, at 106,653 to 107,960
SMc02613
SMc02614: SMc02614 - hypothetical protein, at 108,064 to 108,327
SMc02614
SMc02615: SMc02615 - signal peptide protein, at 108,352 to 109,095
SMc02615
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-1
0
1
2 at 105.657 kb on + strand, within SMc02612 at 105.658 kb on - strand, within SMc02612 at 105.664 kb on - strand, within SMc02612 at 105.928 kb on - strand, within SMc02612 at 105.954 kb on + strand, within SMc02612 at 105.957 kb on + strand, within SMc02612 at 105.957 kb on + strand, within SMc02612 at 105.957 kb on + strand, within SMc02612 at 105.958 kb on - strand, within SMc02612 at 105.958 kb on - strand, within SMc02612 at 106.130 kb on - strand, within SMc02612 at 106.266 kb on + strand, within SMc02612 at 106.267 kb on - strand, within SMc02612 at 106.267 kb on - strand, within SMc02612 at 106.296 kb on + strand, within SMc02612 at 106.297 kb on - strand, within SMc02612 at 106.402 kb on - strand, within SMc02612 at 106.549 kb on - strand at 106.699 kb on - strand at 107.149 kb on - strand, within SMc02613 at 107.149 kb on - strand, within SMc02613 at 107.176 kb on - strand, within SMc02613 at 107.226 kb on + strand, within SMc02613 at 107.755 kb on - strand, within SMc02613 at 107.755 kb on - strand, within SMc02613 at 107.773 kb on + strand, within SMc02613 at 107.773 kb on + strand, within SMc02613 at 107.824 kb on - strand, within SMc02613 at 107.878 kb on - strand at 107.910 kb on + strand at 107.911 kb on - strand at 107.911 kb on - strand at 107.911 kb on - strand at 107.911 kb on - strand at 107.911 kb on - strand at 107.911 kb on - strand at 107.958 kb on + strand at 107.959 kb on - strand at 107.963 kb on + strand at 107.964 kb on - strand at 107.964 kb on - strand at 108.054 kb on + strand at 108.054 kb on + strand at 108.191 kb on + strand, within SMc02614 at 108.191 kb on + strand, within SMc02614 at 108.211 kb on + strand, within SMc02614 at 108.212 kb on - strand, within SMc02614 at 108.305 kb on + strand at 108.353 kb on + strand at 108.353 kb on + strand at 108.354 kb on - strand at 108.354 kb on - strand at 108.354 kb on - strand at 108.354 kb on - strand at 108.382 kb on + strand at 108.382 kb on + strand at 108.482 kb on - strand, within SMc02615 at 108.753 kb on - strand, within SMc02615 at 108.950 kb on - strand, within SMc02615
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 105,657 + SMc02612 0.31 -0.5 105,658 - SMc02612 0.31 +0.5 105,664 - SMc02612 0.32 +0.7 105,928 - SMc02612 0.52 +0.2 105,954 + SMc02612 0.53 -0.8 105,957 + SMc02612 0.54 +0.8 105,957 + SMc02612 0.54 -0.2 105,957 + SMc02612 0.54 +0.7 105,958 - SMc02612 0.54 +0.5 105,958 - SMc02612 0.54 +0.3 106,130 - SMc02612 0.67 +2.0 106,266 + SMc02612 0.77 -0.7 106,267 - SMc02612 0.77 +0.2 106,267 - SMc02612 0.77 +0.6 106,296 + SMc02612 0.79 -0.2 106,297 - SMc02612 0.79 +0.4 106,402 - SMc02612 0.87 +0.0 106,549 - +0.3 106,699 - -0.2 107,149 - SMc02613 0.38 -0.6 107,149 - SMc02613 0.38 +0.4 107,176 - SMc02613 0.40 +0.8 107,226 + SMc02613 0.44 -1.0 107,755 - SMc02613 0.84 -0.1 107,755 - SMc02613 0.84 +0.5 107,773 + SMc02613 0.86 +0.7 107,773 + SMc02613 0.86 -0.7 107,824 - SMc02613 0.90 -0.0 107,878 - +0.2 107,910 + +0.1 107,911 - -1.2 107,911 - -0.1 107,911 - -0.2 107,911 - +0.1 107,911 - -0.2 107,911 - -0.3 107,958 + -0.2 107,959 - -0.9 107,963 + +0.0 107,964 - +0.7 107,964 - +0.3 108,054 + +1.2 108,054 + +1.0 108,191 + SMc02614 0.48 +0.5 108,191 + SMc02614 0.48 +0.5 108,211 + SMc02614 0.56 +0.0 108,212 - SMc02614 0.56 +0.6 108,305 + -0.1 108,353 + -0.3 108,353 + -1.0 108,354 - -1.1 108,354 - -1.1 108,354 - +0.1 108,354 - -0.0 108,382 + +0.5 108,382 + +0.0 108,482 - SMc02615 0.17 -0.2 108,753 - SMc02615 0.54 +0.3 108,950 - SMc02615 0.80 -0.0
Or see this region's nucleotide sequence