Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02321 and SMc02322 are separated by 13 nucleotides SMc02322 and SMc02323 are separated by 200 nucleotides
SMc02321: SMc02321 - L-rhamnose isomerase (EC 5.3.1.14) <small>(from data)</small>, at 690,552 to 691,844
SMc02321
SMc02322: SMc02322 - rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) <small>(from data)</small>, at 691,858 to 693,957
SMc02322
SMc02323: SMc02323 - transcriptional regulator, at 694,158 to 694,970
SMc02323
Position (kb) 691
692
693
694 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 691.130 kb on - strand, within SMc02321 at 691.157 kb on + strand, within SMc02321 at 691.157 kb on + strand, within SMc02321 at 691.158 kb on - strand, within SMc02321 at 691.162 kb on + strand, within SMc02321 at 691.163 kb on - strand, within SMc02321 at 691.249 kb on + strand, within SMc02321 at 691.250 kb on - strand, within SMc02321 at 691.615 kb on - strand, within SMc02321 at 691.699 kb on + strand, within SMc02321 at 691.771 kb on + strand at 691.771 kb on + strand at 691.771 kb on + strand at 691.772 kb on - strand at 691.902 kb on + strand at 691.903 kb on - strand at 691.960 kb on - strand at 692.003 kb on + strand at 692.037 kb on - strand at 692.037 kb on - strand at 692.192 kb on + strand, within SMc02322 at 692.192 kb on + strand, within SMc02322 at 692.193 kb on - strand, within SMc02322 at 692.307 kb on - strand, within SMc02322 at 692.403 kb on + strand, within SMc02322 at 692.673 kb on + strand, within SMc02322 at 692.674 kb on - strand, within SMc02322 at 692.674 kb on - strand, within SMc02322 at 692.744 kb on + strand, within SMc02322 at 692.792 kb on + strand, within SMc02322 at 692.864 kb on + strand, within SMc02322 at 692.865 kb on - strand, within SMc02322 at 692.921 kb on + strand, within SMc02322 at 692.922 kb on - strand, within SMc02322 at 692.922 kb on - strand, within SMc02322 at 692.924 kb on + strand, within SMc02322 at 692.924 kb on + strand, within SMc02322 at 692.980 kb on - strand, within SMc02322 at 693.314 kb on + strand, within SMc02322 at 693.560 kb on + strand, within SMc02322 at 693.560 kb on + strand, within SMc02322 at 693.560 kb on + strand, within SMc02322 at 693.560 kb on + strand, within SMc02322 at 693.561 kb on - strand, within SMc02322 at 693.651 kb on - strand, within SMc02322 at 693.663 kb on - strand, within SMc02322 at 693.695 kb on + strand, within SMc02322 at 693.696 kb on - strand, within SMc02322 at 693.696 kb on - strand, within SMc02322 at 693.696 kb on - strand, within SMc02322 at 693.813 kb on + strand at 693.827 kb on + strand at 694.006 kb on + strand at 694.007 kb on - strand at 694.007 kb on - strand at 694.602 kb on + strand, within SMc02323 at 694.621 kb on + strand, within SMc02323 at 694.621 kb on + strand, within SMc02323 at 694.622 kb on - strand, within SMc02323 at 694.622 kb on - strand, within SMc02323 at 694.622 kb on - strand, within SMc02323 at 694.659 kb on + strand, within SMc02323 at 694.660 kb on - strand, within SMc02323
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 691,130 - SMc02321 0.45 +0.5 691,157 + SMc02321 0.47 -0.5 691,157 + SMc02321 0.47 +0.0 691,158 - SMc02321 0.47 -0.3 691,162 + SMc02321 0.47 -0.2 691,163 - SMc02321 0.47 +0.2 691,249 + SMc02321 0.54 -0.5 691,250 - SMc02321 0.54 -0.1 691,615 - SMc02321 0.82 +0.2 691,699 + SMc02321 0.89 -0.6 691,771 + -0.5 691,771 + +0.0 691,771 + -0.2 691,772 - +0.2 691,902 + -0.1 691,903 - -0.5 691,960 - -0.5 692,003 + +0.2 692,037 - -0.6 692,037 - -0.5 692,192 + SMc02322 0.16 +0.1 692,192 + SMc02322 0.16 +0.0 692,193 - SMc02322 0.16 -0.8 692,307 - SMc02322 0.21 -0.2 692,403 + SMc02322 0.26 +0.1 692,673 + SMc02322 0.39 +0.0 692,674 - SMc02322 0.39 -0.2 692,674 - SMc02322 0.39 +0.1 692,744 + SMc02322 0.42 -1.6 692,792 + SMc02322 0.44 +0.5 692,864 + SMc02322 0.48 -0.8 692,865 - SMc02322 0.48 -1.6 692,921 + SMc02322 0.51 +0.0 692,922 - SMc02322 0.51 -0.7 692,922 - SMc02322 0.51 +0.1 692,924 + SMc02322 0.51 -0.4 692,924 + SMc02322 0.51 -0.3 692,980 - SMc02322 0.53 +0.2 693,314 + SMc02322 0.69 +0.2 693,560 + SMc02322 0.81 +3.0 693,560 + SMc02322 0.81 +0.2 693,560 + SMc02322 0.81 +0.9 693,560 + SMc02322 0.81 -0.0 693,561 - SMc02322 0.81 -0.5 693,651 - SMc02322 0.85 -0.7 693,663 - SMc02322 0.86 -0.4 693,695 + SMc02322 0.87 -0.1 693,696 - SMc02322 0.88 -0.1 693,696 - SMc02322 0.88 -0.4 693,696 - SMc02322 0.88 -0.1 693,813 + +0.1 693,827 + -0.8 694,006 + -0.6 694,007 - -1.0 694,007 - +0.2 694,602 + SMc02323 0.55 -1.8 694,621 + SMc02323 0.57 +0.6 694,621 + SMc02323 0.57 +0.1 694,622 - SMc02323 0.57 +0.4 694,622 - SMc02323 0.57 -0.5 694,622 - SMc02323 0.57 +1.0 694,659 + SMc02323 0.62 -0.2 694,660 - SMc02323 0.62 -1.2
Or see this region's nucleotide sequence