Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01990 and SMc01991 are separated by 131 nucleotides SMc01991 and SMc01992 are separated by 80 nucleotides
SMc01990: SMc01990 - ferredoxin reductase, at 2,715,471 to 2,716,700
SMc01990
SMc01991: SMc01991 - short chain dehydrogenase, at 2,716,832 to 2,717,557
SMc01991
SMc01992: SMc01992 - alcohol dehydrogenase, at 2,717,638 to 2,718,678
SMc01992
Position (kb)
2716
2717
2718 Strain fitness (log2 ratio)
-1
0
1
2 at 2715.877 kb on + strand, within SMc01990 at 2715.877 kb on + strand, within SMc01990 at 2715.877 kb on + strand, within SMc01990 at 2715.877 kb on + strand, within SMc01990 at 2715.878 kb on - strand, within SMc01990 at 2715.878 kb on - strand, within SMc01990 at 2715.878 kb on - strand, within SMc01990 at 2716.149 kb on + strand, within SMc01990 at 2716.150 kb on - strand, within SMc01990 at 2716.248 kb on + strand, within SMc01990 at 2716.442 kb on + strand, within SMc01990 at 2716.443 kb on - strand, within SMc01990 at 2716.471 kb on + strand, within SMc01990 at 2716.471 kb on + strand, within SMc01990 at 2716.471 kb on + strand, within SMc01990 at 2716.472 kb on - strand, within SMc01990 at 2716.577 kb on - strand, within SMc01990 at 2716.638 kb on + strand at 2716.639 kb on - strand at 2716.639 kb on - strand at 2716.742 kb on + strand at 2716.742 kb on + strand at 2716.742 kb on + strand at 2716.742 kb on + strand at 2716.742 kb on + strand at 2716.742 kb on + strand at 2716.742 kb on + strand at 2716.743 kb on - strand at 2716.743 kb on - strand at 2716.743 kb on - strand at 2716.743 kb on - strand at 2717.268 kb on + strand, within SMc01991 at 2717.659 kb on + strand at 2717.793 kb on - strand, within SMc01992 at 2717.804 kb on + strand, within SMc01992 at 2717.844 kb on + strand, within SMc01992 at 2718.050 kb on + strand, within SMc01992 at 2718.050 kb on + strand, within SMc01992 at 2718.073 kb on - strand, within SMc01992 at 2718.096 kb on - strand, within SMc01992 at 2718.096 kb on - strand, within SMc01992 at 2718.211 kb on + strand, within SMc01992 at 2718.211 kb on + strand, within SMc01992 at 2718.275 kb on + strand, within SMc01992 at 2718.275 kb on + strand, within SMc01992 at 2718.275 kb on + strand, within SMc01992 at 2718.276 kb on - strand, within SMc01992 at 2718.276 kb on - strand, within SMc01992 at 2718.276 kb on - strand, within SMc01992 at 2718.276 kb on - strand, within SMc01992 at 2718.346 kb on + strand, within SMc01992 at 2718.366 kb on - strand, within SMc01992 at 2718.366 kb on - strand, within SMc01992 at 2718.366 kb on - strand, within SMc01992 at 2718.366 kb on - strand, within SMc01992 at 2718.366 kb on - strand, within SMc01992 at 2718.496 kb on + strand, within SMc01992 at 2718.497 kb on - strand, within SMc01992 at 2718.540 kb on + strand, within SMc01992 at 2718.540 kb on + strand, within SMc01992 at 2718.540 kb on + strand, within SMc01992 at 2718.540 kb on + strand, within SMc01992 at 2718.540 kb on + strand, within SMc01992 at 2718.541 kb on - strand, within SMc01992 at 2718.541 kb on - strand, within SMc01992 at 2718.542 kb on + strand, within SMc01992 at 2718.542 kb on + strand, within SMc01992 at 2718.542 kb on + strand, within SMc01992 at 2718.542 kb on + strand, within SMc01992 at 2718.543 kb on - strand, within SMc01992 at 2718.543 kb on - strand, within SMc01992 at 2718.543 kb on - strand, within SMc01992 at 2718.543 kb on - strand, within SMc01992 at 2718.546 kb on - strand, within SMc01992
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,715,877 + SMc01990 0.33 -0.7 2,715,877 + SMc01990 0.33 +0.1 2,715,877 + SMc01990 0.33 -0.3 2,715,877 + SMc01990 0.33 -0.1 2,715,878 - SMc01990 0.33 -0.4 2,715,878 - SMc01990 0.33 -0.4 2,715,878 - SMc01990 0.33 +0.8 2,716,149 + SMc01990 0.55 +0.2 2,716,150 - SMc01990 0.55 +0.3 2,716,248 + SMc01990 0.63 -1.1 2,716,442 + SMc01990 0.79 +0.9 2,716,443 - SMc01990 0.79 +0.6 2,716,471 + SMc01990 0.81 -1.3 2,716,471 + SMc01990 0.81 +0.1 2,716,471 + SMc01990 0.81 +0.3 2,716,472 - SMc01990 0.81 +0.0 2,716,577 - SMc01990 0.90 -0.8 2,716,638 + -0.5 2,716,639 - -0.1 2,716,639 - -0.2 2,716,742 + +0.1 2,716,742 + -0.2 2,716,742 + +0.2 2,716,742 + +0.5 2,716,742 + -0.1 2,716,742 + -0.3 2,716,742 + -0.1 2,716,743 - -0.1 2,716,743 - -0.5 2,716,743 - +0.1 2,716,743 - +0.2 2,717,268 + SMc01991 0.60 -0.2 2,717,659 + -1.5 2,717,793 - SMc01992 0.15 -0.1 2,717,804 + SMc01992 0.16 -0.1 2,717,844 + SMc01992 0.20 -0.9 2,718,050 + SMc01992 0.40 +1.2 2,718,050 + SMc01992 0.40 -0.3 2,718,073 - SMc01992 0.42 -0.0 2,718,096 - SMc01992 0.44 -0.2 2,718,096 - SMc01992 0.44 +0.3 2,718,211 + SMc01992 0.55 +0.8 2,718,211 + SMc01992 0.55 +0.1 2,718,275 + SMc01992 0.61 +0.6 2,718,275 + SMc01992 0.61 -0.2 2,718,275 + SMc01992 0.61 -0.0 2,718,276 - SMc01992 0.61 +0.2 2,718,276 - SMc01992 0.61 -0.5 2,718,276 - SMc01992 0.61 -0.2 2,718,276 - SMc01992 0.61 -0.3 2,718,346 + SMc01992 0.68 +0.6 2,718,366 - SMc01992 0.70 -0.5 2,718,366 - SMc01992 0.70 +0.2 2,718,366 - SMc01992 0.70 +0.7 2,718,366 - SMc01992 0.70 +0.7 2,718,366 - SMc01992 0.70 -0.5 2,718,496 + SMc01992 0.82 -0.2 2,718,497 - SMc01992 0.83 +0.2 2,718,540 + SMc01992 0.87 -0.0 2,718,540 + SMc01992 0.87 -0.2 2,718,540 + SMc01992 0.87 +1.8 2,718,540 + SMc01992 0.87 -0.4 2,718,540 + SMc01992 0.87 +1.4 2,718,541 - SMc01992 0.87 -0.2 2,718,541 - SMc01992 0.87 -0.2 2,718,542 + SMc01992 0.87 -0.9 2,718,542 + SMc01992 0.87 -1.1 2,718,542 + SMc01992 0.87 -0.4 2,718,542 + SMc01992 0.87 -0.3 2,718,543 - SMc01992 0.87 -0.4 2,718,543 - SMc01992 0.87 +0.1 2,718,543 - SMc01992 0.87 +0.3 2,718,543 - SMc01992 0.87 -0.5 2,718,546 - SMc01992 0.87 -0.3
Or see this region's nucleotide sequence