Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00884 and SMc00883 are separated by 90 nucleotides SMc00883 and SMc00882 overlap by 4 nucleotides SMc00882 and SMc00881 are separated by 14 nucleotides
SMc00884: SMc00884 - dihydroxy-acid dehydratase, at 901,995 to 903,719
SMc00884
SMc00883: SMc00883 - L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) <small>(from data)</small>, at 903,810 to 904,694
SMc00883
SMc00882: SMc00882 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 904,691 to 905,329
SMc00882
SMc00881: SMc00881 - 2-dehydro-3-deoxygalactonokinase, at 905,344 to 906,264
SMc00881
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 902.856 kb on - strand, within SMc00884 at 903.382 kb on + strand, within SMc00884 at 903.399 kb on + strand, within SMc00884 at 903.537 kb on - strand, within SMc00884 at 903.582 kb on + strand at 903.811 kb on + strand at 903.811 kb on + strand at 903.812 kb on - strand at 903.994 kb on + strand, within SMc00883 at 904.022 kb on + strand, within SMc00883 at 904.024 kb on + strand, within SMc00883 at 904.024 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.168 kb on - strand, within SMc00883 at 904.265 kb on + strand, within SMc00883 at 904.265 kb on + strand, within SMc00883 at 904.266 kb on - strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.301 kb on - strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.707 kb on + strand at 904.720 kb on - strand at 904.824 kb on + strand, within SMc00882 at 904.824 kb on + strand, within SMc00882 at 904.825 kb on - strand, within SMc00882 at 904.825 kb on - strand, within SMc00882 at 904.825 kb on - strand at 905.122 kb on + strand, within SMc00882 at 905.234 kb on - strand, within SMc00882 at 905.271 kb on - strand at 905.271 kb on - strand at 905.271 kb on - strand at 905.342 kb on + strand at 905.445 kb on + strand, within SMc00881 at 905.451 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.656 kb on + strand, within SMc00881 at 905.656 kb on + strand, within SMc00881 at 905.657 kb on - strand, within SMc00881 at 905.694 kb on + strand, within SMc00881
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 902,856 - SMc00884 0.50 -0.7 903,382 + SMc00884 0.80 +0.4 903,399 + SMc00884 0.81 +0.2 903,537 - SMc00884 0.89 +0.3 903,582 + +0.2 903,811 + -0.3 903,811 + -0.1 903,812 - -0.8 903,994 + SMc00883 0.21 -0.4 904,022 + SMc00883 0.24 -1.7 904,024 + SMc00883 0.24 -0.4 904,024 + SMc00883 0.24 -1.3 904,167 + SMc00883 0.40 -1.8 904,167 + SMc00883 0.40 -1.0 904,167 + SMc00883 0.40 -2.7 904,167 + SMc00883 0.40 -0.6 904,168 - SMc00883 0.40 -1.4 904,265 + SMc00883 0.51 -1.3 904,265 + SMc00883 0.51 -0.1 904,266 - SMc00883 0.52 -2.2 904,300 + SMc00883 0.55 -1.3 904,300 + SMc00883 0.55 -0.3 904,300 + SMc00883 0.55 -0.9 904,301 - SMc00883 0.55 -1.2 904,586 + SMc00883 0.88 -1.5 904,586 + SMc00883 0.88 -1.4 904,587 - SMc00883 0.88 -0.8 904,587 - SMc00883 0.88 -1.3 904,587 - SMc00883 0.88 -0.5 904,587 - SMc00883 0.88 -0.0 904,707 + -1.2 904,720 - -0.3 904,824 + SMc00882 0.21 -2.9 904,824 + SMc00882 0.21 -1.8 904,825 - SMc00882 0.21 -0.3 904,825 - SMc00882 0.21 -0.6 904,825 - +3.2 905,122 + SMc00882 0.67 -0.7 905,234 - SMc00882 0.85 -0.4 905,271 - +0.5 905,271 - -0.9 905,271 - -0.4 905,342 + -2.2 905,445 + SMc00881 0.11 -0.7 905,451 - SMc00881 0.12 +0.3 905,486 - SMc00881 0.15 -0.1 905,486 - SMc00881 0.15 +1.0 905,486 - SMc00881 0.15 -0.5 905,486 - SMc00881 0.15 +0.6 905,656 + SMc00881 0.34 -1.7 905,656 + SMc00881 0.34 -2.2 905,657 - SMc00881 0.34 -0.5 905,694 + SMc00881 0.38 -1.2
Or see this region's nucleotide sequence