Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00391 and SMc00392 are separated by 43 nucleotides SMc00392 and SMc00393 overlap by 1 nucleotides SMc00393 and SMc00394 are separated by 29 nucleotides SMc00394 and SMc00395 are separated by 106 nucleotides SMc00395 and SMc00396 overlap by 4 nucleotides
SMc00391: SMc00391 - hypothetical protein, at 343,024 to 343,218
SMc00391
SMc00392: SMc00392 - hypothetical protein, at 343,262 to 343,504
SMc00392
SMc00393: SMc00393 - hypothetical protein, at 343,504 to 343,929
SMc00393
SMc00394: SMc00394 - GMP synthase, at 343,959 to 345,521
SMc00394
SMc00395: SMc00395 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 345,628 to 346,266
SMc00395
SMc00396: SMc00396 - hypothetical protein, at 346,263 to 346,715
SMc00396
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -1
0
1 at 342.959 kb on + strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.960 kb on - strand at 342.960 kb on - strand at 342.960 kb on - strand at 342.962 kb on + strand at 342.963 kb on - strand at 343.014 kb on + strand at 343.014 kb on + strand at 343.015 kb on - strand at 343.150 kb on + strand, within SMc00391 at 343.232 kb on + strand at 343.232 kb on + strand at 343.242 kb on + strand at 343.243 kb on - strand at 343.499 kb on + strand at 343.499 kb on + strand at 343.510 kb on + strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.920 kb on + strand at 343.920 kb on + strand at 343.921 kb on - strand at 343.955 kb on + strand at 343.955 kb on + strand at 343.956 kb on - strand at 345.560 kb on - strand at 345.560 kb on - strand at 345.588 kb on - strand at 345.711 kb on - strand, within SMc00395 at 345.772 kb on + strand, within SMc00395 at 345.773 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 346.132 kb on + strand, within SMc00395 at 346.200 kb on - strand, within SMc00395 at 346.223 kb on + strand at 346.223 kb on + strand at 346.223 kb on + strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.355 kb on - strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.508 kb on - strand, within SMc00396
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 342,959 + -0.5 342,959 + +0.1 342,959 + +0.3 342,959 + -0.2 342,960 - -0.2 342,960 - -1.3 342,960 - -0.7 342,962 + -0.2 342,963 - -0.1 343,014 + +0.1 343,014 + -0.8 343,015 - +0.0 343,150 + SMc00391 0.65 +0.2 343,232 + -0.2 343,232 + +0.1 343,242 + -0.1 343,243 - -1.0 343,499 + -0.2 343,499 + -0.6 343,510 + -0.2 343,511 - -0.1 343,511 - +0.3 343,511 - -0.1 343,920 + +0.5 343,920 + -0.3 343,921 - +0.4 343,955 + +0.9 343,955 + +0.4 343,956 - +0.4 345,560 - +0.5 345,560 - +0.2 345,588 - +1.2 345,711 - SMc00395 0.13 +0.6 345,772 + SMc00395 0.23 +0.3 345,773 - SMc00395 0.23 -0.3 345,855 - SMc00395 0.36 -0.0 345,855 - SMc00395 0.36 -1.1 345,855 - SMc00395 0.36 -0.3 346,132 + SMc00395 0.79 -0.2 346,200 - SMc00395 0.90 -0.2 346,223 + +0.2 346,223 + +0.9 346,223 + +0.4 346,224 - +0.1 346,224 - +0.3 346,224 - -0.3 346,355 - SMc00396 0.20 +0.9 346,507 + SMc00396 0.54 +0.2 346,507 + SMc00396 0.54 +0.0 346,507 + SMc00396 0.54 +0.8 346,508 - SMc00396 0.54 -0.8
Or see this region's nucleotide sequence