Strain Fitness in Sinorhizobium meliloti 1021 around SMc00372

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00370 and SMc00371 are separated by 33 nucleotidesSMc00371 and SMc00372 are separated by 220 nucleotidesSMc00372 and SMc00373 are separated by 140 nucleotidesSMc00373 and SMc00374 are separated by 86 nucleotides SMc00370: SMc00370 - transcriptional regulator, at 324,843 to 325,733 SMc00370 SMc00371: SMc00371 - hypothetical protein, at 325,767 to 326,258 SMc00371 SMc00372: SMc00372 - short chain dehydrogenase, at 326,479 to 327,249 SMc00372 SMc00373: SMc00373 - hypothetical protein, at 327,390 to 328,064 SMc00373 SMc00374: SMc00374 - oxidoreductase transmembrane protein, at 328,151 to 329,101 SMc00374 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1at 325.566 kb on + strand, within SMc00370at 325.566 kb on + strand, within SMc00370at 325.566 kb on + strand, within SMc00370at 325.567 kb on - strand, within SMc00370at 325.593 kb on + strand, within SMc00370at 325.594 kb on - strand, within SMc00370at 325.768 kb on + strandat 325.924 kb on + strand, within SMc00371at 326.073 kb on + strand, within SMc00371at 326.200 kb on + strand, within SMc00371at 326.203 kb on + strand, within SMc00371at 326.203 kb on + strand, within SMc00371at 326.203 kb on + strand, within SMc00371at 326.203 kb on + strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.219 kb on + strandat 326.227 kb on - strandat 326.385 kb on - strandat 326.385 kb on - strandat 326.497 kb on - strandat 326.584 kb on - strand, within SMc00372at 326.793 kb on - strand, within SMc00372at 326.818 kb on - strand, within SMc00372at 327.169 kb on + strand, within SMc00372at 327.169 kb on + strand, within SMc00372at 327.189 kb on + strandat 327.189 kb on + strandat 327.190 kb on - strandat 327.273 kb on + strandat 327.355 kb on + strandat 327.355 kb on + strandat 327.356 kb on - strandat 327.356 kb on - strandat 327.356 kb on - strandat 327.436 kb on + strandat 327.437 kb on - strandat 327.437 kb on - strandat 327.437 kb on - strandat 327.695 kb on + strand, within SMc00373at 327.696 kb on - strand, within SMc00373at 327.828 kb on + strand, within SMc00373at 327.909 kb on + strand, within SMc00373at 327.910 kb on - strand, within SMc00373at 327.979 kb on - strand, within SMc00373at 328.063 kb on - strandat 328.063 kb on - strandat 328.063 kb on - strandat 328.108 kb on + strandat 328.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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325,566 + SMc00370 0.81 -0.2
325,566 + SMc00370 0.81 -0.1
325,566 + SMc00370 0.81 +0.7
325,567 - SMc00370 0.81 -0.1
325,593 + SMc00370 0.84 +0.2
325,594 - SMc00370 0.84 +0.6
325,768 + -0.1
325,924 + SMc00371 0.32 +0.5
326,073 + SMc00371 0.62 +0.2
326,200 + SMc00371 0.88 +0.0
326,203 + SMc00371 0.89 -0.4
326,203 + SMc00371 0.89 -2.2
326,203 + SMc00371 0.89 +0.1
326,203 + SMc00371 0.89 +0.1
326,204 - SMc00371 0.89 -0.7
326,204 - SMc00371 0.89 -0.3
326,204 - SMc00371 0.89 +0.3
326,204 - SMc00371 0.89 +0.6
326,204 - SMc00371 0.89 +0.3
326,204 - SMc00371 0.89 +0.0
326,219 + +0.4
326,227 - +0.0
326,385 - +0.6
326,385 - -0.5
326,497 - +0.3
326,584 - SMc00372 0.14 +0.3
326,793 - SMc00372 0.41 -0.3
326,818 - SMc00372 0.44 +0.1
327,169 + SMc00372 0.89 +0.4
327,169 + SMc00372 0.89 -0.1
327,189 + +0.9
327,189 + +0.1
327,190 - -0.3
327,273 + +0.1
327,355 + -0.3
327,355 + -0.2
327,356 - +0.4
327,356 - -0.2
327,356 - +0.5
327,436 + +0.3
327,437 - -0.3
327,437 - -0.2
327,437 - +0.4
327,695 + SMc00373 0.45 -0.5
327,696 - SMc00373 0.45 -0.2
327,828 + SMc00373 0.65 -0.3
327,909 + SMc00373 0.77 -1.2
327,910 - SMc00373 0.77 -0.3
327,979 - SMc00373 0.87 -0.4
328,063 - -0.3
328,063 - -0.5
328,063 - -0.3
328,108 + -0.2
328,178 + +0.1

Or see this region's nucleotide sequence