Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00370 and SMc00371 are separated by 33 nucleotides SMc00371 and SMc00372 are separated by 220 nucleotides SMc00372 and SMc00373 are separated by 140 nucleotides SMc00373 and SMc00374 are separated by 86 nucleotides
SMc00370: SMc00370 - transcriptional regulator, at 324,843 to 325,733
SMc00370
SMc00371: SMc00371 - hypothetical protein, at 325,767 to 326,258
SMc00371
SMc00372: SMc00372 - short chain dehydrogenase, at 326,479 to 327,249
SMc00372
SMc00373: SMc00373 - hypothetical protein, at 327,390 to 328,064
SMc00373
SMc00374: SMc00374 - oxidoreductase transmembrane protein, at 328,151 to 329,101
SMc00374
Position (kb)
326
327
328 Strain fitness (log2 ratio)
-2
-1
0
1 at 325.566 kb on + strand, within SMc00370 at 325.566 kb on + strand, within SMc00370 at 325.566 kb on + strand, within SMc00370 at 325.567 kb on - strand, within SMc00370 at 325.593 kb on + strand, within SMc00370 at 325.594 kb on - strand, within SMc00370 at 325.768 kb on + strand at 325.924 kb on + strand, within SMc00371 at 326.073 kb on + strand, within SMc00371 at 326.200 kb on + strand, within SMc00371 at 326.203 kb on + strand, within SMc00371 at 326.203 kb on + strand, within SMc00371 at 326.203 kb on + strand, within SMc00371 at 326.203 kb on + strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.219 kb on + strand at 326.227 kb on - strand at 326.385 kb on - strand at 326.385 kb on - strand at 326.497 kb on - strand at 326.584 kb on - strand, within SMc00372 at 326.793 kb on - strand, within SMc00372 at 326.818 kb on - strand, within SMc00372 at 327.169 kb on + strand, within SMc00372 at 327.169 kb on + strand, within SMc00372 at 327.189 kb on + strand at 327.189 kb on + strand at 327.190 kb on - strand at 327.273 kb on + strand at 327.355 kb on + strand at 327.355 kb on + strand at 327.356 kb on - strand at 327.356 kb on - strand at 327.356 kb on - strand at 327.436 kb on + strand at 327.437 kb on - strand at 327.437 kb on - strand at 327.437 kb on - strand at 327.695 kb on + strand, within SMc00373 at 327.696 kb on - strand, within SMc00373 at 327.828 kb on + strand, within SMc00373 at 327.909 kb on + strand, within SMc00373 at 327.910 kb on - strand, within SMc00373 at 327.979 kb on - strand, within SMc00373 at 328.063 kb on - strand at 328.063 kb on - strand at 328.063 kb on - strand at 328.108 kb on + strand at 328.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 325,566 + SMc00370 0.81 -0.2 325,566 + SMc00370 0.81 -0.1 325,566 + SMc00370 0.81 +0.7 325,567 - SMc00370 0.81 -0.1 325,593 + SMc00370 0.84 +0.2 325,594 - SMc00370 0.84 +0.6 325,768 + -0.1 325,924 + SMc00371 0.32 +0.5 326,073 + SMc00371 0.62 +0.2 326,200 + SMc00371 0.88 +0.0 326,203 + SMc00371 0.89 -0.4 326,203 + SMc00371 0.89 -2.2 326,203 + SMc00371 0.89 +0.1 326,203 + SMc00371 0.89 +0.1 326,204 - SMc00371 0.89 -0.7 326,204 - SMc00371 0.89 -0.3 326,204 - SMc00371 0.89 +0.3 326,204 - SMc00371 0.89 +0.6 326,204 - SMc00371 0.89 +0.3 326,204 - SMc00371 0.89 +0.0 326,219 + +0.4 326,227 - +0.0 326,385 - +0.6 326,385 - -0.5 326,497 - +0.3 326,584 - SMc00372 0.14 +0.3 326,793 - SMc00372 0.41 -0.3 326,818 - SMc00372 0.44 +0.1 327,169 + SMc00372 0.89 +0.4 327,169 + SMc00372 0.89 -0.1 327,189 + +0.9 327,189 + +0.1 327,190 - -0.3 327,273 + +0.1 327,355 + -0.3 327,355 + -0.2 327,356 - +0.4 327,356 - -0.2 327,356 - +0.5 327,436 + +0.3 327,437 - -0.3 327,437 - -0.2 327,437 - +0.4 327,695 + SMc00373 0.45 -0.5 327,696 - SMc00373 0.45 -0.2 327,828 + SMc00373 0.65 -0.3 327,909 + SMc00373 0.77 -1.2 327,910 - SMc00373 0.77 -0.3 327,979 - SMc00373 0.87 -0.4 328,063 - -0.3 328,063 - -0.5 328,063 - -0.3 328,108 + -0.2 328,178 + +0.1
Or see this region's nucleotide sequence