Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1514 and SMa1515 are separated by 45 nucleotides SMa1515 and SMa1516 are separated by 353 nucleotides SMa1516 and SMa1519 are separated by 69 nucleotides SMa1519 and SMa1521 are separated by 43 nucleotides
SMa1514: SMa1514 - ABC transporter permease, at 834,984 to 835,904
SMa1514
SMa1515: SMa1515 - hypothetical protein, at 835,950 to 836,141
SMa1515
SMa1516: SMa1516 - NuoH2 NADH:ubiquinone oxidoreductase subunit 1 (chain H), at 836,495 to 837,481
SMa1516
SMa1519: SMa1519 - NADH:ubiquinone oxidoreductase subunit 6 (chain I), at 837,551 to 838,117
SMa1519
SMa1521: SMa1521 - hypothetical protein, at 838,161 to 838,601
SMa1521
Position (kb) 836
837
838 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 835.594 kb on - strand, within SMa1514 at 835.594 kb on - strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.800 kb on + strand, within SMa1514 at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.902 kb on + strand at 835.962 kb on + strand at 835.962 kb on + strand at 835.963 kb on - strand at 836.120 kb on + strand, within SMa1515 at 836.120 kb on + strand, within SMa1515 at 836.120 kb on + strand, within SMa1515 at 836.121 kb on - strand, within SMa1515 at 836.121 kb on - strand, within SMa1515 at 836.273 kb on + strand at 836.388 kb on + strand at 836.503 kb on + strand at 836.700 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.703 kb on + strand, within SMa1516 at 836.704 kb on - strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.850 kb on + strand, within SMa1516 at 836.851 kb on - strand, within SMa1516 at 836.851 kb on - strand, within SMa1516 at 836.891 kb on + strand, within SMa1516 at 836.891 kb on + strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.931 kb on - strand, within SMa1516 at 837.194 kb on + strand, within SMa1516 at 837.194 kb on + strand, within SMa1516 at 837.194 kb on + strand, within SMa1516 at 837.233 kb on + strand, within SMa1516 at 837.353 kb on + strand, within SMa1516 at 837.353 kb on - strand, within SMa1516 at 837.454 kb on - strand at 837.454 kb on - strand at 837.454 kb on - strand at 837.471 kb on + strand at 837.638 kb on + strand, within SMa1519 at 837.638 kb on + strand, within SMa1519 at 837.638 kb on + strand, within SMa1519 at 837.638 kb on + strand, within SMa1519 at 837.695 kb on + strand, within SMa1519 at 837.695 kb on + strand, within SMa1519 at 837.813 kb on - strand, within SMa1519 at 837.932 kb on + strand, within SMa1519 at 837.933 kb on - strand, within SMa1519 at 838.086 kb on - strand at 838.333 kb on - strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.474 kb on + strand, within SMa1521 at 838.475 kb on - strand, within SMa1521
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 835,594 - SMa1514 0.66 -0.2 835,594 - SMa1514 0.66 +0.5 835,608 + SMa1514 0.68 -0.1 835,608 + SMa1514 0.68 +0.3 835,608 + SMa1514 0.68 -0.0 835,800 + SMa1514 0.89 +0.6 835,816 + +0.1 835,816 + -0.2 835,816 + +0.2 835,816 + -0.7 835,816 + -0.1 835,817 - +0.2 835,817 - -0.3 835,817 - -0.8 835,817 - +0.7 835,817 - +0.3 835,817 - +0.7 835,817 - +0.1 835,902 + -0.6 835,962 + +0.5 835,962 + -0.7 835,963 - -0.4 836,120 + SMa1515 0.89 +0.1 836,120 + SMa1515 0.89 -0.0 836,120 + SMa1515 0.89 -0.1 836,121 - SMa1515 0.89 -0.0 836,121 - SMa1515 0.89 -1.3 836,273 + -0.1 836,388 + -0.3 836,503 + +3.1 836,700 + SMa1516 0.21 +0.2 836,701 + SMa1516 0.21 +0.2 836,701 + SMa1516 0.21 -0.0 836,701 + SMa1516 0.21 -0.0 836,702 - SMa1516 0.21 +0.7 836,702 - SMa1516 0.21 +0.5 836,702 - SMa1516 0.21 -0.2 836,702 - SMa1516 0.21 +0.5 836,703 + SMa1516 0.21 -0.2 836,704 - SMa1516 0.21 -0.1 836,831 + SMa1516 0.34 -0.2 836,831 + SMa1516 0.34 +0.6 836,831 + SMa1516 0.34 -0.8 836,832 - SMa1516 0.34 -0.4 836,832 - SMa1516 0.34 +0.9 836,832 - SMa1516 0.34 -0.1 836,850 + SMa1516 0.36 -0.1 836,851 - SMa1516 0.36 +0.6 836,851 - SMa1516 0.36 -0.6 836,891 + SMa1516 0.40 +0.1 836,891 + SMa1516 0.40 +0.1 836,892 - SMa1516 0.40 +0.3 836,892 - SMa1516 0.40 -0.5 836,892 - SMa1516 0.40 +0.0 836,892 - SMa1516 0.40 +0.0 836,931 - SMa1516 0.44 -0.4 837,194 + SMa1516 0.71 +1.7 837,194 + SMa1516 0.71 -2.3 837,194 + SMa1516 0.71 -0.3 837,233 + SMa1516 0.75 -0.6 837,353 + SMa1516 0.87 +0.0 837,353 - SMa1516 0.87 +0.1 837,454 - +0.6 837,454 - -0.1 837,454 - -0.1 837,471 + -0.2 837,638 + SMa1519 0.15 +1.5 837,638 + SMa1519 0.15 -0.2 837,638 + SMa1519 0.15 -0.3 837,638 + SMa1519 0.15 +0.4 837,695 + SMa1519 0.25 -0.2 837,695 + SMa1519 0.25 -0.1 837,813 - SMa1519 0.46 -0.0 837,932 + SMa1519 0.67 +0.2 837,933 - SMa1519 0.67 +0.4 838,086 - -0.2 838,333 - SMa1521 0.39 -1.0 838,471 + SMa1521 0.70 -1.1 838,471 + SMa1521 0.70 -0.3 838,471 + SMa1521 0.70 -0.8 838,472 - SMa1521 0.71 -0.1 838,472 - SMa1521 0.71 +0.0 838,472 - SMa1521 0.71 +0.4 838,472 - SMa1521 0.71 -2.1 838,472 - SMa1521 0.71 +0.0 838,474 + SMa1521 0.71 -0.2 838,475 - SMa1521 0.71 -0.1
Or see this region's nucleotide sequence