Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1438 and SMa1440 are separated by 74 nucleotides SMa1440 and SMa1442 are separated by 60 nucleotides
SMa1438: SMa1438 - ABC transporter substrate-binding protein, at 792,785 to 794,293
SMa1438
SMa1440: SMa1440 - 5-dehydro-4-deoxyglucarate dehydratase, at 794,368 to 795,273
SMa1440
SMa1442: SMa1442 - GntR family transcriptional regulator, at 795,334 to 796,098
SMa1442
Position (kb) 794
795
796 Strain fitness (log2 ratio) -2
-1
0
1 at 793.537 kb on - strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 794.132 kb on + strand, within SMa1438 at 794.133 kb on - strand, within SMa1438 at 794.232 kb on + strand at 794.232 kb on + strand at 794.324 kb on + strand at 794.325 kb on - strand at 794.401 kb on + strand at 794.402 kb on - strand at 794.402 kb on - strand at 794.548 kb on - strand, within SMa1440 at 794.709 kb on + strand, within SMa1440 at 794.853 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.937 kb on - strand, within SMa1440 at 795.049 kb on + strand, within SMa1440 at 795.049 kb on + strand, within SMa1440 at 795.616 kb on + strand, within SMa1442 at 795.619 kb on - strand, within SMa1442 at 795.856 kb on + strand, within SMa1442 at 795.998 kb on + strand, within SMa1442 at 795.998 kb on + strand, within SMa1442 at 795.999 kb on - strand, within SMa1442 at 795.999 kb on - strand, within SMa1442 at 796.025 kb on - strand at 796.026 kb on + strand at 796.027 kb on - strand at 796.077 kb on + strand at 796.091 kb on - strand at 796.236 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 793,537 - SMa1438 0.50 -1.3 793,650 + SMa1438 0.57 -0.2 793,650 + SMa1438 0.57 -0.4 793,650 + SMa1438 0.57 -0.6 793,650 + SMa1438 0.57 +0.2 793,650 + SMa1438 0.57 +0.8 793,651 - SMa1438 0.57 -0.3 793,651 - SMa1438 0.57 -0.9 793,651 - SMa1438 0.57 +0.8 793,651 - SMa1438 0.57 -0.3 794,132 + SMa1438 0.89 -0.1 794,133 - SMa1438 0.89 -0.5 794,232 + +1.6 794,232 + -1.1 794,324 + +0.1 794,325 - -0.5 794,401 + +0.1 794,402 - +0.1 794,402 - -0.3 794,548 - SMa1440 0.20 -0.2 794,709 + SMa1440 0.38 +0.3 794,853 + SMa1440 0.54 -0.3 794,906 + SMa1440 0.59 +0.1 794,906 + SMa1440 0.59 -0.1 794,906 + SMa1440 0.59 +1.3 794,906 + SMa1440 0.59 -0.4 794,907 - SMa1440 0.59 -0.5 794,907 - SMa1440 0.59 -0.5 794,907 - SMa1440 0.59 -0.3 794,907 - SMa1440 0.59 +1.1 794,937 - SMa1440 0.63 +0.9 795,049 + SMa1440 0.75 -0.1 795,049 + SMa1440 0.75 -2.3 795,616 + SMa1442 0.37 +0.2 795,619 - SMa1442 0.37 -0.3 795,856 + SMa1442 0.68 -0.7 795,998 + SMa1442 0.87 -0.2 795,998 + SMa1442 0.87 -0.2 795,999 - SMa1442 0.87 -0.0 795,999 - SMa1442 0.87 +0.2 796,025 - -1.4 796,026 + -0.2 796,027 - +0.1 796,077 + -0.6 796,091 - +0.6 796,236 + -0.5
Or see this region's nucleotide sequence