Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1409 and SMa1410 are separated by 112 nucleotides SMa1410 and SMa1413 are separated by 396 nucleotides SMa1413 and SMa1414 are separated by 227 nucleotides
SMa1409: SMa1409 - acyl-CoA transferase, at 774,204 to 775,775
SMa1409
SMa1410: SMa1410 - oxidoreductase, at 775,888 to 776,721
SMa1410
SMa1413: SMa1413 - hypothetical protein, at 777,118 to 777,393
SMa1413
SMa1414: SMa1414 - Dehydrogenase, FAD-dependent, at 777,621 to 779,216
SMa1414
Position (kb) 775
776
777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 774.956 kb on + strand, within SMa1409 at 774.956 kb on + strand, within SMa1409 at 774.956 kb on + strand, within SMa1409 at 775.053 kb on + strand, within SMa1409 at 775.924 kb on + strand at 775.924 kb on + strand at 775.925 kb on - strand at 775.945 kb on + strand at 775.946 kb on - strand at 776.029 kb on + strand, within SMa1410 at 776.029 kb on + strand, within SMa1410 at 776.029 kb on + strand, within SMa1410 at 776.090 kb on + strand, within SMa1410 at 776.091 kb on - strand, within SMa1410 at 776.091 kb on - strand, within SMa1410 at 776.091 kb on - strand, within SMa1410 at 776.091 kb on - strand, within SMa1410 at 776.337 kb on - strand, within SMa1410 at 776.337 kb on - strand, within SMa1410 at 776.337 kb on - strand, within SMa1410 at 776.562 kb on + strand, within SMa1410 at 776.562 kb on + strand, within SMa1410 at 776.562 kb on + strand, within SMa1410 at 776.562 kb on + strand, within SMa1410 at 776.562 kb on + strand, within SMa1410 at 776.563 kb on - strand, within SMa1410 at 776.606 kb on + strand, within SMa1410 at 776.606 kb on + strand, within SMa1410 at 776.607 kb on - strand, within SMa1410 at 776.668 kb on + strand at 776.668 kb on + strand at 776.720 kb on - strand at 776.764 kb on + strand at 776.789 kb on - strand at 776.814 kb on - strand at 776.814 kb on - strand at 776.839 kb on + strand at 776.864 kb on + strand at 776.864 kb on + strand at 776.864 kb on + strand at 776.865 kb on - strand at 776.865 kb on - strand at 776.865 kb on - strand at 776.871 kb on - strand at 776.893 kb on - strand at 776.893 kb on - strand at 776.934 kb on + strand at 776.934 kb on + strand at 776.934 kb on + strand at 776.935 kb on - strand at 776.935 kb on - strand at 776.935 kb on - strand at 776.936 kb on + strand at 776.936 kb on + strand at 776.957 kb on + strand at 776.957 kb on + strand at 776.958 kb on - strand at 776.959 kb on + strand at 776.960 kb on - strand at 776.960 kb on - strand at 777.058 kb on + strand at 777.058 kb on + strand at 777.331 kb on + strand, within SMa1413 at 777.331 kb on + strand, within SMa1413 at 777.534 kb on + strand at 777.534 kb on + strand at 777.535 kb on - strand at 777.562 kb on - strand at 777.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 774,956 + SMa1409 0.48 -0.2 774,956 + SMa1409 0.48 -0.2 774,956 + SMa1409 0.48 -0.1 775,053 + SMa1409 0.54 +0.2 775,924 + -0.5 775,924 + +0.2 775,925 - -0.9 775,945 + -0.7 775,946 - +1.3 776,029 + SMa1410 0.17 +0.4 776,029 + SMa1410 0.17 +0.3 776,029 + SMa1410 0.17 -0.8 776,090 + SMa1410 0.24 +0.1 776,091 - SMa1410 0.24 -0.6 776,091 - SMa1410 0.24 +0.5 776,091 - SMa1410 0.24 -0.1 776,091 - SMa1410 0.24 +0.1 776,337 - SMa1410 0.54 +0.0 776,337 - SMa1410 0.54 +0.0 776,337 - SMa1410 0.54 +0.1 776,562 + SMa1410 0.81 +0.1 776,562 + SMa1410 0.81 +0.7 776,562 + SMa1410 0.81 +0.0 776,562 + SMa1410 0.81 -4.2 776,562 + SMa1410 0.81 -0.3 776,563 - SMa1410 0.81 -0.5 776,606 + SMa1410 0.86 +0.2 776,606 + SMa1410 0.86 -0.4 776,607 - SMa1410 0.86 -0.3 776,668 + -0.7 776,668 + +0.3 776,720 - +0.4 776,764 + +0.5 776,789 - -0.8 776,814 - +0.9 776,814 - -1.6 776,839 + -0.5 776,864 + -1.7 776,864 + +0.2 776,864 + -2.0 776,865 - -0.2 776,865 - +0.4 776,865 - +1.5 776,871 - -1.2 776,893 - +0.2 776,893 - -0.2 776,934 + -0.2 776,934 + +0.3 776,934 + -0.0 776,935 - +0.5 776,935 - +0.4 776,935 - -0.5 776,936 + +1.4 776,936 + +0.3 776,957 + +0.3 776,957 + +1.6 776,958 - +0.3 776,959 + +1.3 776,960 - +0.1 776,960 - -0.0 777,058 + +0.4 777,058 + +0.3 777,331 + SMa1413 0.77 -0.2 777,331 + SMa1413 0.77 -1.3 777,534 + -0.2 777,534 + -0.5 777,535 - -0.0 777,562 - -0.4 777,672 - -0.5
Or see this region's nucleotide sequence