Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0719 and SMa0722 are separated by 98 nucleotides SMa0722 and SMa0723 are separated by 37 nucleotides SMa0723 and SMa0726 are separated by 589 nucleotides
SMa0719: SMa0719 - short-chain alcohol dehydrogenase, at 391,032 to 391,751
SMa0719
SMa0722: SMa0722 - transposase, at 391,850 to 392,461
SMa0722
SMa0723: SMa0723 - hypothetical protein, at 392,499 to 393,287
SMa0723
SMa0726: SMa0726 - hypothetical protein, at 393,877 to 394,269
SMa0726
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 391.538 kb on - strand, within SMa0719 at 391.620 kb on + strand, within SMa0719 at 391.706 kb on + strand at 391.707 kb on - strand at 391.914 kb on - strand, within SMa0722 at 391.931 kb on - strand, within SMa0722 at 392.029 kb on - strand, within SMa0722 at 392.106 kb on + strand, within SMa0722 at 392.186 kb on + strand, within SMa0722 at 392.186 kb on + strand, within SMa0722 at 392.186 kb on + strand, within SMa0722 at 392.186 kb on + strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.259 kb on + strand, within SMa0722 at 392.445 kb on - strand at 392.617 kb on + strand, within SMa0723 at 392.618 kb on - strand, within SMa0723 at 392.740 kb on + strand, within SMa0723 at 392.741 kb on - strand, within SMa0723 at 392.823 kb on + strand, within SMa0723 at 392.907 kb on + strand, within SMa0723 at 392.908 kb on - strand, within SMa0723 at 393.190 kb on - strand, within SMa0723 at 393.190 kb on - strand, within SMa0723 at 393.199 kb on - strand, within SMa0723 at 393.353 kb on + strand at 393.353 kb on + strand at 393.490 kb on - strand at 393.585 kb on + strand at 393.585 kb on + strand at 393.634 kb on + strand at 393.636 kb on + strand at 393.636 kb on + strand at 393.637 kb on - strand at 393.637 kb on - strand at 393.795 kb on + strand at 393.796 kb on - strand at 393.810 kb on + strand at 393.811 kb on - strand at 393.811 kb on - strand at 393.864 kb on + strand at 393.864 kb on + strand at 393.864 kb on + strand at 393.898 kb on + strand at 393.932 kb on + strand, within SMa0726 at 393.932 kb on + strand, within SMa0726 at 393.933 kb on - strand, within SMa0726 at 393.974 kb on - strand, within SMa0726 at 393.999 kb on + strand, within SMa0726 at 394.000 kb on - strand, within SMa0726 at 394.000 kb on - strand, within SMa0726 at 394.012 kb on + strand, within SMa0726 at 394.012 kb on + strand, within SMa0726 at 394.041 kb on + strand, within SMa0726 at 394.041 kb on + strand, within SMa0726 at 394.042 kb on - strand, within SMa0726 at 394.143 kb on + strand, within SMa0726 at 394.144 kb on - strand, within SMa0726 at 394.144 kb on - strand, within SMa0726 at 394.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 391,538 - SMa0719 0.70 -0.0 391,620 + SMa0719 0.82 +0.2 391,706 + +1.0 391,707 - +0.2 391,914 - SMa0722 0.10 -0.2 391,931 - SMa0722 0.13 -1.3 392,029 - SMa0722 0.29 +0.2 392,106 + SMa0722 0.42 -0.9 392,186 + SMa0722 0.55 +0.1 392,186 + SMa0722 0.55 +0.0 392,186 + SMa0722 0.55 +0.2 392,186 + SMa0722 0.55 +0.1 392,187 - SMa0722 0.55 -0.2 392,187 - SMa0722 0.55 -0.3 392,187 - SMa0722 0.55 +0.6 392,187 - SMa0722 0.55 +0.4 392,187 - SMa0722 0.55 -0.3 392,187 - SMa0722 0.55 +0.1 392,187 - SMa0722 0.55 -0.5 392,187 - SMa0722 0.55 -0.1 392,259 + SMa0722 0.67 -1.2 392,445 - +0.6 392,617 + SMa0723 0.15 -0.1 392,618 - SMa0723 0.15 -0.1 392,740 + SMa0723 0.31 -0.3 392,741 - SMa0723 0.31 -0.4 392,823 + SMa0723 0.41 -1.5 392,907 + SMa0723 0.52 +0.8 392,908 - SMa0723 0.52 +1.0 393,190 - SMa0723 0.88 +0.2 393,190 - SMa0723 0.88 +0.0 393,199 - SMa0723 0.89 -0.1 393,353 + +0.4 393,353 + +0.2 393,490 - -0.0 393,585 + +1.0 393,585 + -0.2 393,634 + -0.1 393,636 + -1.4 393,636 + -0.2 393,637 - -0.1 393,637 - +0.2 393,795 + +0.2 393,796 - +0.4 393,810 + -1.3 393,811 - +0.3 393,811 - +0.2 393,864 + +0.2 393,864 + -0.0 393,864 + +0.2 393,898 + -0.3 393,932 + SMa0726 0.14 +0.9 393,932 + SMa0726 0.14 +0.6 393,933 - SMa0726 0.14 -0.2 393,974 - SMa0726 0.25 -0.3 393,999 + SMa0726 0.31 -1.2 394,000 - SMa0726 0.31 -0.4 394,000 - SMa0726 0.31 -0.3 394,012 + SMa0726 0.34 -0.9 394,012 + SMa0726 0.34 -0.2 394,041 + SMa0726 0.42 -0.5 394,041 + SMa0726 0.42 -2.5 394,042 - SMa0726 0.42 -0.1 394,143 + SMa0726 0.68 +0.4 394,144 - SMa0726 0.68 -0.9 394,144 - SMa0726 0.68 -0.5 394,268 - -0.3
Or see this region's nucleotide sequence