Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_607 and Pf6N2E2_608 are separated by 132 nucleotides Pf6N2E2_608 and Pf6N2E2_609 are separated by 349 nucleotides
Pf6N2E2_607 - hypothetical protein, at 685,441 to 690,153
_607
Pf6N2E2_608 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 690,286 to 691,005
_608
Pf6N2E2_609 - L-arabonate dehydratase (EC 4.2.1.25) <small>(from data)</small>, at 691,355 to 693,091
_609
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.337 kb on - strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.528 kb on + strand, within Pf6N2E2_607 at 689.528 kb on + strand, within Pf6N2E2_607 at 689.529 kb on - strand, within Pf6N2E2_607 at 689.638 kb on - strand, within Pf6N2E2_607 at 690.197 kb on + strand at 690.197 kb on + strand at 690.224 kb on + strand at 690.224 kb on + strand at 690.225 kb on - strand at 690.225 kb on - strand at 690.226 kb on + strand at 690.226 kb on + strand at 690.226 kb on + strand at 690.227 kb on - strand at 690.227 kb on - strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.280 kb on + strand at 690.280 kb on + strand at 690.281 kb on - strand at 690.281 kb on - strand at 690.285 kb on - strand at 690.285 kb on - strand at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.760 kb on - strand, within Pf6N2E2_608 at 690.760 kb on - strand, within Pf6N2E2_608 at 690.809 kb on + strand, within Pf6N2E2_608 at 690.809 kb on + strand, within Pf6N2E2_608 at 690.810 kb on - strand, within Pf6N2E2_608 at 690.872 kb on + strand, within Pf6N2E2_608 at 690.873 kb on - strand, within Pf6N2E2_608 at 690.873 kb on - strand, within Pf6N2E2_608 at 690.907 kb on - strand, within Pf6N2E2_608 at 690.998 kb on + strand at 691.047 kb on + strand at 691.048 kb on - strand at 691.119 kb on - strand at 691.197 kb on + strand at 691.198 kb on - strand at 691.290 kb on + strand at 691.291 kb on - strand at 691.291 kb on - strand at 691.374 kb on - strand at 691.446 kb on + strand at 691.446 kb on + strand at 691.446 kb on + strand at 691.446 kb on + strand at 691.447 kb on - strand at 691.685 kb on - strand, within Pf6N2E2_609 at 691.833 kb on + strand, within Pf6N2E2_609 at 691.834 kb on - strand, within Pf6N2E2_609 at 691.834 kb on - strand, within Pf6N2E2_609 at 691.951 kb on + strand, within Pf6N2E2_609 at 691.951 kb on + strand, within Pf6N2E2_609
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 689,336 + Pf6N2E2_607 0.83 -0.6 689,336 + Pf6N2E2_607 0.83 -0.6 689,336 + Pf6N2E2_607 0.83 -0.5 689,337 - Pf6N2E2_607 0.83 +1.0 689,522 + Pf6N2E2_607 0.87 +0.5 689,522 + Pf6N2E2_607 0.87 -0.9 689,522 + Pf6N2E2_607 0.87 +0.3 689,522 + Pf6N2E2_607 0.87 +0.1 689,528 + Pf6N2E2_607 0.87 +0.5 689,528 + Pf6N2E2_607 0.87 -1.0 689,529 - Pf6N2E2_607 0.87 +0.7 689,638 - Pf6N2E2_607 0.89 +0.1 690,197 + +0.5 690,197 + -0.1 690,224 + -1.1 690,224 + +0.1 690,225 - -1.0 690,225 - +0.7 690,226 + +0.1 690,226 + +0.1 690,226 + +0.5 690,227 - +1.1 690,227 - -0.3 690,228 + -1.5 690,228 + -0.0 690,228 + -0.6 690,228 + +0.6 690,228 + -1.5 690,228 + +1.1 690,228 + -0.2 690,228 + -0.3 690,228 + -0.4 690,228 + +1.6 690,228 + -0.0 690,228 + +0.0 690,229 - -0.1 690,229 - +1.3 690,229 - +0.1 690,229 - +1.1 690,229 - +1.3 690,229 - -1.7 690,229 - -0.5 690,229 - -1.2 690,229 - -0.7 690,280 + +1.2 690,280 + +0.7 690,281 - -0.8 690,281 - -0.0 690,285 - -0.2 690,285 - +0.6 690,759 + Pf6N2E2_608 0.66 -1.2 690,759 + Pf6N2E2_608 0.66 +1.2 690,759 + Pf6N2E2_608 0.66 +0.2 690,759 + Pf6N2E2_608 0.66 -0.1 690,759 + Pf6N2E2_608 0.66 -0.3 690,759 + Pf6N2E2_608 0.66 +1.2 690,760 - Pf6N2E2_608 0.66 +1.7 690,760 - Pf6N2E2_608 0.66 +0.1 690,809 + Pf6N2E2_608 0.73 +0.9 690,809 + Pf6N2E2_608 0.73 +0.2 690,810 - Pf6N2E2_608 0.73 -0.2 690,872 + Pf6N2E2_608 0.81 +0.5 690,873 - Pf6N2E2_608 0.82 +1.3 690,873 - Pf6N2E2_608 0.82 +1.2 690,907 - Pf6N2E2_608 0.86 +0.6 690,998 + +0.1 691,047 + -0.2 691,048 - +0.1 691,119 - +0.3 691,197 + +1.4 691,198 - +2.1 691,290 + +0.7 691,291 - -1.2 691,291 - -1.4 691,374 - -2.6 691,446 + -2.2 691,446 + -1.3 691,446 + -3.7 691,446 + -2.0 691,447 - -1.7 691,685 - Pf6N2E2_609 0.19 -1.4 691,833 + Pf6N2E2_609 0.28 -1.9 691,834 - Pf6N2E2_609 0.28 -1.1 691,834 - Pf6N2E2_609 0.28 -3.0 691,951 + Pf6N2E2_609 0.34 -3.1 691,951 + Pf6N2E2_609 0.34 -3.0
Or see this region's nucleotide sequence