Experiment: Amylose from potato 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17560 and HMPREF1058_RS21405 are separated by 5 nucleotides HMPREF1058_RS21405 and HMPREF1058_RS17555 overlap by 28 nucleotides HMPREF1058_RS17555 and HMPREF1058_RS17550 overlap by 1 nucleotides
HMPREF1058_RS17560: HMPREF1058_RS17560 - phage integrase SAM-like domain-containing protein, at 397,251 to 398,306
_RS17560
HMPREF1058_RS21405: HMPREF1058_RS21405 - hypothetical protein, at 398,312 to 398,536
_RS21405
HMPREF1058_RS17555: HMPREF1058_RS17555 - hypothetical protein, at 398,509 to 398,727
_RS17555
HMPREF1058_RS17550: HMPREF1058_RS17550 - caspase family protein, at 398,727 to 400,283
_RS17550
Position (kb) 398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 397.558 kb on - strand, within HMPREF1058_RS17560 at 397.818 kb on + strand, within HMPREF1058_RS17560 at 397.818 kb on + strand, within HMPREF1058_RS17560 at 397.818 kb on + strand, within HMPREF1058_RS17560 at 397.840 kb on + strand, within HMPREF1058_RS17560 at 397.841 kb on - strand, within HMPREF1058_RS17560 at 397.844 kb on - strand, within HMPREF1058_RS17560 at 397.872 kb on + strand, within HMPREF1058_RS17560 at 397.893 kb on - strand, within HMPREF1058_RS17560 at 398.065 kb on + strand, within HMPREF1058_RS17560 at 398.239 kb on + strand at 398.249 kb on + strand at 398.371 kb on - strand, within HMPREF1058_RS21405 at 398.454 kb on - strand, within HMPREF1058_RS21405 at 398.542 kb on + strand, within HMPREF1058_RS17555 at 398.543 kb on - strand, within HMPREF1058_RS17555 at 398.543 kb on - strand, within HMPREF1058_RS17555 at 398.545 kb on - strand, within HMPREF1058_RS17555 at 398.608 kb on + strand, within HMPREF1058_RS17555 at 398.608 kb on + strand, within HMPREF1058_RS17555 at 398.664 kb on - strand, within HMPREF1058_RS17555 at 398.664 kb on - strand, within HMPREF1058_RS17555 at 398.676 kb on - strand, within HMPREF1058_RS17555 at 398.728 kb on + strand at 398.729 kb on - strand at 398.748 kb on + strand at 398.775 kb on + strand at 398.788 kb on - strand at 398.795 kb on + strand at 398.795 kb on + strand at 398.795 kb on + strand at 398.796 kb on - strand at 398.796 kb on - strand at 398.796 kb on - strand at 398.797 kb on + strand at 398.798 kb on - strand at 398.798 kb on - strand at 398.799 kb on + strand at 398.799 kb on + strand at 398.799 kb on + strand at 398.800 kb on - strand at 398.800 kb on - strand at 398.800 kb on - strand at 398.824 kb on - strand at 398.831 kb on + strand at 398.834 kb on + strand at 398.851 kb on - strand at 398.862 kb on + strand at 398.867 kb on + strand at 398.867 kb on + strand at 398.910 kb on - strand, within HMPREF1058_RS17550 at 398.914 kb on - strand, within HMPREF1058_RS17550 at 398.914 kb on - strand, within HMPREF1058_RS17550 at 398.925 kb on + strand, within HMPREF1058_RS17550 at 398.926 kb on - strand, within HMPREF1058_RS17550 at 398.947 kb on - strand, within HMPREF1058_RS17550 at 398.976 kb on + strand, within HMPREF1058_RS17550 at 398.977 kb on - strand, within HMPREF1058_RS17550 at 398.985 kb on + strand, within HMPREF1058_RS17550 at 398.990 kb on + strand, within HMPREF1058_RS17550 at 398.990 kb on + strand, within HMPREF1058_RS17550 at 399.029 kb on - strand, within HMPREF1058_RS17550 at 399.033 kb on + strand, within HMPREF1058_RS17550 at 399.087 kb on + strand, within HMPREF1058_RS17550 at 399.105 kb on - strand at 399.105 kb on - strand, within HMPREF1058_RS17550 at 399.119 kb on + strand, within HMPREF1058_RS17550 at 399.119 kb on + strand, within HMPREF1058_RS17550 at 399.124 kb on - strand, within HMPREF1058_RS17550 at 399.187 kb on - strand, within HMPREF1058_RS17550 at 399.199 kb on - strand, within HMPREF1058_RS17550 at 399.294 kb on + strand, within HMPREF1058_RS17550 at 399.370 kb on - strand, within HMPREF1058_RS17550 at 399.600 kb on + strand, within HMPREF1058_RS17550 at 399.601 kb on - strand, within HMPREF1058_RS17550 at 399.612 kb on + strand, within HMPREF1058_RS17550 at 399.613 kb on - strand, within HMPREF1058_RS17550 at 399.634 kb on - strand, within HMPREF1058_RS17550 at 399.674 kb on + strand, within HMPREF1058_RS17550 at 399.677 kb on - strand, within HMPREF1058_RS17550
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 5 mg/ml (C) remove 397,558 - HMPREF1058_RS17560 0.29 +0.2 397,818 + HMPREF1058_RS17560 0.54 +1.5 397,818 + HMPREF1058_RS17560 0.54 +0.5 397,818 + HMPREF1058_RS17560 0.54 +0.9 397,840 + HMPREF1058_RS17560 0.56 -3.5 397,841 - HMPREF1058_RS17560 0.56 -1.7 397,844 - HMPREF1058_RS17560 0.56 +0.8 397,872 + HMPREF1058_RS17560 0.59 -1.7 397,893 - HMPREF1058_RS17560 0.61 -1.5 398,065 + HMPREF1058_RS17560 0.77 -0.3 398,239 + -2.1 398,249 + +1.0 398,371 - HMPREF1058_RS21405 0.26 -3.1 398,454 - HMPREF1058_RS21405 0.63 +0.7 398,542 + HMPREF1058_RS17555 0.15 -1.1 398,543 - HMPREF1058_RS17555 0.16 +0.4 398,543 - HMPREF1058_RS17555 0.16 +0.3 398,545 - HMPREF1058_RS17555 0.16 -1.2 398,608 + HMPREF1058_RS17555 0.45 -0.4 398,608 + HMPREF1058_RS17555 0.45 +0.5 398,664 - HMPREF1058_RS17555 0.71 +2.4 398,664 - HMPREF1058_RS17555 0.71 +0.8 398,676 - HMPREF1058_RS17555 0.76 +1.1 398,728 + -0.1 398,729 - -1.2 398,748 + -0.9 398,775 + -1.1 398,788 - -1.7 398,795 + -1.9 398,795 + -2.2 398,795 + -0.5 398,796 - +1.0 398,796 - +0.2 398,796 - -2.8 398,797 + -2.9 398,798 - +0.6 398,798 - +0.6 398,799 + -0.8 398,799 + -1.5 398,799 + -2.6 398,800 - -2.2 398,800 - -1.0 398,800 - +0.2 398,824 - +0.1 398,831 + -1.2 398,834 + +0.4 398,851 - -2.0 398,862 + -1.6 398,867 + -0.6 398,867 + +0.5 398,910 - HMPREF1058_RS17550 0.12 -0.2 398,914 - HMPREF1058_RS17550 0.12 -0.6 398,914 - HMPREF1058_RS17550 0.12 +0.2 398,925 + HMPREF1058_RS17550 0.13 -1.3 398,926 - HMPREF1058_RS17550 0.13 -3.1 398,947 - HMPREF1058_RS17550 0.14 -1.4 398,976 + HMPREF1058_RS17550 0.16 -2.1 398,977 - HMPREF1058_RS17550 0.16 +0.5 398,985 + HMPREF1058_RS17550 0.17 -2.0 398,990 + HMPREF1058_RS17550 0.17 -0.5 398,990 + HMPREF1058_RS17550 0.17 +1.1 399,029 - HMPREF1058_RS17550 0.19 +0.6 399,033 + HMPREF1058_RS17550 0.20 -1.7 399,087 + HMPREF1058_RS17550 0.23 -0.2 399,105 - +0.8 399,105 - HMPREF1058_RS17550 0.24 +0.5 399,119 + HMPREF1058_RS17550 0.25 -1.9 399,119 + HMPREF1058_RS17550 0.25 -2.6 399,124 - HMPREF1058_RS17550 0.25 -2.7 399,187 - HMPREF1058_RS17550 0.30 +2.0 399,199 - HMPREF1058_RS17550 0.30 +1.1 399,294 + HMPREF1058_RS17550 0.36 -0.8 399,370 - HMPREF1058_RS17550 0.41 +0.6 399,600 + HMPREF1058_RS17550 0.56 -1.8 399,601 - HMPREF1058_RS17550 0.56 -1.8 399,612 + HMPREF1058_RS17550 0.57 -2.2 399,613 - HMPREF1058_RS17550 0.57 -1.1 399,634 - HMPREF1058_RS17550 0.58 -1.8 399,674 + HMPREF1058_RS17550 0.61 +0.1 399,677 - HMPREF1058_RS17550 0.61 -1.3
Or see this region's nucleotide sequence