Experiment: Amylose from potato 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16610 and HMPREF1058_RS16605 are separated by 23 nucleotides HMPREF1058_RS16605 and HMPREF1058_RS16600 are separated by 27 nucleotides HMPREF1058_RS16600 and HMPREF1058_RS16595 overlap by 17 nucleotides HMPREF1058_RS16595 and HMPREF1058_RS16590 are separated by 20 nucleotides
HMPREF1058_RS16610: HMPREF1058_RS16610 - hypothetical protein, at 635,809 to 636,480
_RS16610
HMPREF1058_RS16605: HMPREF1058_RS16605 - ABC transporter ATP-binding protein, at 636,504 to 637,391
_RS16605
HMPREF1058_RS16600: HMPREF1058_RS16600 - PepSY-associated TM helix domain-containing protein, at 637,419 to 637,994
_RS16600
HMPREF1058_RS16595: HMPREF1058_RS16595 - hypothetical protein, at 637,978 to 638,562
_RS16595
HMPREF1058_RS16590: HMPREF1058_RS16590 - hypothetical protein, at 638,583 to 640,133
_RS16590
Position (kb) 637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 636.480 kb on + strand at 636.481 kb on - strand at 636.629 kb on - strand, within HMPREF1058_RS16605 at 636.707 kb on + strand, within HMPREF1058_RS16605 at 636.713 kb on + strand, within HMPREF1058_RS16605 at 636.713 kb on + strand, within HMPREF1058_RS16605 at 636.713 kb on + strand, within HMPREF1058_RS16605 at 636.713 kb on + strand, within HMPREF1058_RS16605 at 636.818 kb on + strand, within HMPREF1058_RS16605 at 636.819 kb on - strand, within HMPREF1058_RS16605 at 636.871 kb on - strand, within HMPREF1058_RS16605 at 636.874 kb on + strand, within HMPREF1058_RS16605 at 637.007 kb on + strand, within HMPREF1058_RS16605 at 637.024 kb on - strand, within HMPREF1058_RS16605 at 637.051 kb on + strand, within HMPREF1058_RS16605 at 637.119 kb on - strand, within HMPREF1058_RS16605 at 637.245 kb on + strand, within HMPREF1058_RS16605 at 637.246 kb on - strand, within HMPREF1058_RS16605 at 637.251 kb on - strand, within HMPREF1058_RS16605 at 637.351 kb on + strand at 637.380 kb on - strand at 637.420 kb on + strand at 637.442 kb on + strand at 637.506 kb on + strand, within HMPREF1058_RS16600 at 637.516 kb on - strand, within HMPREF1058_RS16600 at 637.642 kb on + strand, within HMPREF1058_RS16600 at 637.737 kb on - strand, within HMPREF1058_RS16600 at 637.790 kb on + strand, within HMPREF1058_RS16600 at 637.790 kb on + strand, within HMPREF1058_RS16600 at 637.826 kb on + strand, within HMPREF1058_RS16600 at 637.841 kb on + strand, within HMPREF1058_RS16600 at 637.847 kb on + strand, within HMPREF1058_RS16600 at 637.847 kb on + strand, within HMPREF1058_RS16600 at 637.848 kb on - strand, within HMPREF1058_RS16600 at 637.848 kb on - strand, within HMPREF1058_RS16600 at 637.860 kb on + strand, within HMPREF1058_RS16600 at 637.973 kb on + strand at 637.979 kb on + strand at 638.011 kb on - strand at 638.016 kb on - strand at 638.016 kb on - strand at 638.204 kb on + strand, within HMPREF1058_RS16595 at 638.364 kb on + strand, within HMPREF1058_RS16595 at 638.364 kb on + strand, within HMPREF1058_RS16595 at 638.365 kb on - strand, within HMPREF1058_RS16595 at 638.511 kb on + strand at 638.512 kb on - strand at 638.637 kb on - strand at 638.676 kb on - strand at 638.723 kb on + strand at 638.726 kb on + strand at 638.728 kb on + strand at 638.728 kb on + strand at 638.728 kb on + strand at 638.728 kb on + strand at 638.728 kb on + strand at 638.740 kb on - strand, within HMPREF1058_RS16590 at 638.744 kb on - strand, within HMPREF1058_RS16590 at 638.827 kb on + strand, within HMPREF1058_RS16590 at 638.875 kb on + strand, within HMPREF1058_RS16590 at 638.876 kb on - strand, within HMPREF1058_RS16590 at 638.962 kb on + strand, within HMPREF1058_RS16590 at 638.962 kb on + strand, within HMPREF1058_RS16590 at 638.963 kb on - strand, within HMPREF1058_RS16590 at 638.963 kb on - strand, within HMPREF1058_RS16590 at 638.963 kb on - strand, within HMPREF1058_RS16590 at 638.963 kb on - strand, within HMPREF1058_RS16590 at 638.967 kb on + strand, within HMPREF1058_RS16590 at 638.967 kb on + strand, within HMPREF1058_RS16590 at 638.968 kb on - strand, within HMPREF1058_RS16590
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 5 mg/ml (C) remove 636,480 + -1.4 636,481 - +1.1 636,629 - HMPREF1058_RS16605 0.14 +0.9 636,707 + HMPREF1058_RS16605 0.23 -0.3 636,713 + HMPREF1058_RS16605 0.24 +0.1 636,713 + HMPREF1058_RS16605 0.24 -1.6 636,713 + HMPREF1058_RS16605 0.24 -2.2 636,713 + HMPREF1058_RS16605 0.24 -0.1 636,818 + HMPREF1058_RS16605 0.35 -1.3 636,819 - HMPREF1058_RS16605 0.35 +1.2 636,871 - HMPREF1058_RS16605 0.41 -0.8 636,874 + HMPREF1058_RS16605 0.42 -0.5 637,007 + HMPREF1058_RS16605 0.57 +1.7 637,024 - HMPREF1058_RS16605 0.59 +0.2 637,051 + HMPREF1058_RS16605 0.62 +0.3 637,119 - HMPREF1058_RS16605 0.69 +0.3 637,245 + HMPREF1058_RS16605 0.83 +1.8 637,246 - HMPREF1058_RS16605 0.84 +0.1 637,251 - HMPREF1058_RS16605 0.84 +0.6 637,351 + +2.0 637,380 - -1.2 637,420 + -1.3 637,442 + -2.5 637,506 + HMPREF1058_RS16600 0.15 +1.1 637,516 - HMPREF1058_RS16600 0.17 -2.8 637,642 + HMPREF1058_RS16600 0.39 -1.7 637,737 - HMPREF1058_RS16600 0.55 +1.2 637,790 + HMPREF1058_RS16600 0.64 +0.1 637,790 + HMPREF1058_RS16600 0.64 -2.5 637,826 + HMPREF1058_RS16600 0.71 -1.7 637,841 + HMPREF1058_RS16600 0.73 +0.3 637,847 + HMPREF1058_RS16600 0.74 +0.4 637,847 + HMPREF1058_RS16600 0.74 +0.4 637,848 - HMPREF1058_RS16600 0.74 -0.1 637,848 - HMPREF1058_RS16600 0.74 +0.1 637,860 + HMPREF1058_RS16600 0.77 -0.9 637,973 + -2.0 637,979 + -2.7 638,011 - -3.1 638,016 - +1.7 638,016 - +0.3 638,204 + HMPREF1058_RS16595 0.39 -0.8 638,364 + HMPREF1058_RS16595 0.66 -2.7 638,364 + HMPREF1058_RS16595 0.66 -0.1 638,365 - HMPREF1058_RS16595 0.66 -3.2 638,511 + -1.0 638,512 - +0.0 638,637 - +0.3 638,676 - -2.8 638,723 + -1.5 638,726 + +0.1 638,728 + +0.4 638,728 + +1.6 638,728 + -0.2 638,728 + -0.2 638,728 + +0.9 638,740 - HMPREF1058_RS16590 0.10 -1.1 638,744 - HMPREF1058_RS16590 0.10 -2.2 638,827 + HMPREF1058_RS16590 0.16 -0.6 638,875 + HMPREF1058_RS16590 0.19 +1.8 638,876 - HMPREF1058_RS16590 0.19 -0.0 638,962 + HMPREF1058_RS16590 0.24 -2.8 638,962 + HMPREF1058_RS16590 0.24 -0.3 638,963 - HMPREF1058_RS16590 0.25 -1.5 638,963 - HMPREF1058_RS16590 0.25 +1.3 638,963 - HMPREF1058_RS16590 0.25 -1.6 638,963 - HMPREF1058_RS16590 0.25 +1.6 638,967 + HMPREF1058_RS16590 0.25 -1.1 638,967 + HMPREF1058_RS16590 0.25 -2.3 638,968 - HMPREF1058_RS16590 0.25 -0.7
Or see this region's nucleotide sequence