Experiment: Amylose from potato 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16220 and HMPREF1058_RS16215 are separated by 55 nucleotides HMPREF1058_RS16215 and HMPREF1058_RS16210 are separated by 185 nucleotides HMPREF1058_RS16210 and HMPREF1058_RS16205 are separated by 3 nucleotides
HMPREF1058_RS16220: HMPREF1058_RS16220 - DEAD/DEAH box helicase, at 728,707 to 730,986
_RS16220
HMPREF1058_RS16215: HMPREF1058_RS16215 - hypothetical protein, at 731,042 to 731,509
_RS16215
HMPREF1058_RS16210: HMPREF1058_RS16210 - hypothetical protein, at 731,695 to 732,264
_RS16210
HMPREF1058_RS16205: HMPREF1058_RS16205 - DUF3987 domain-containing protein, at 732,268 to 734,211
_RS16205
Position (kb) 731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 730.301 kb on + strand, within HMPREF1058_RS16220 at 730.302 kb on - strand, within HMPREF1058_RS16220 at 730.302 kb on - strand, within HMPREF1058_RS16220 at 730.474 kb on + strand, within HMPREF1058_RS16220 at 730.478 kb on + strand, within HMPREF1058_RS16220 at 730.533 kb on + strand, within HMPREF1058_RS16220 at 730.673 kb on - strand, within HMPREF1058_RS16220 at 730.772 kb on + strand at 730.986 kb on + strand at 731.059 kb on + strand at 731.123 kb on + strand, within HMPREF1058_RS16215 at 731.168 kb on + strand, within HMPREF1058_RS16215 at 731.234 kb on - strand, within HMPREF1058_RS16215 at 731.273 kb on + strand, within HMPREF1058_RS16215 at 731.285 kb on - strand, within HMPREF1058_RS16215 at 731.285 kb on - strand, within HMPREF1058_RS16215 at 731.287 kb on - strand, within HMPREF1058_RS16215 at 731.512 kb on - strand at 731.754 kb on + strand, within HMPREF1058_RS16210 at 731.755 kb on - strand, within HMPREF1058_RS16210 at 731.755 kb on - strand, within HMPREF1058_RS16210 at 731.783 kb on - strand, within HMPREF1058_RS16210 at 731.880 kb on - strand, within HMPREF1058_RS16210 at 731.912 kb on - strand, within HMPREF1058_RS16210 at 732.038 kb on + strand, within HMPREF1058_RS16210 at 732.170 kb on - strand, within HMPREF1058_RS16210 at 732.256 kb on - strand at 732.279 kb on + strand at 732.352 kb on + strand at 732.353 kb on - strand at 732.353 kb on - strand at 732.355 kb on - strand at 732.355 kb on - strand at 732.439 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 5 mg/ml (C) remove 730,301 + HMPREF1058_RS16220 0.70 -0.9 730,302 - HMPREF1058_RS16220 0.70 +1.0 730,302 - HMPREF1058_RS16220 0.70 -0.9 730,474 + HMPREF1058_RS16220 0.78 +1.0 730,478 + HMPREF1058_RS16220 0.78 +0.6 730,533 + HMPREF1058_RS16220 0.80 -1.3 730,673 - HMPREF1058_RS16220 0.86 -2.0 730,772 + -0.6 730,986 + -1.0 731,059 + -0.7 731,123 + HMPREF1058_RS16215 0.17 +0.6 731,168 + HMPREF1058_RS16215 0.27 +0.5 731,234 - HMPREF1058_RS16215 0.41 -1.2 731,273 + HMPREF1058_RS16215 0.49 +0.6 731,285 - HMPREF1058_RS16215 0.52 -1.1 731,285 - HMPREF1058_RS16215 0.52 -1.1 731,287 - HMPREF1058_RS16215 0.52 -1.0 731,512 - -0.5 731,754 + HMPREF1058_RS16210 0.10 -3.6 731,755 - HMPREF1058_RS16210 0.11 -1.8 731,755 - HMPREF1058_RS16210 0.11 -1.6 731,783 - HMPREF1058_RS16210 0.15 -3.2 731,880 - HMPREF1058_RS16210 0.32 -0.7 731,912 - HMPREF1058_RS16210 0.38 +0.3 732,038 + HMPREF1058_RS16210 0.60 -1.5 732,170 - HMPREF1058_RS16210 0.83 -2.8 732,256 - +0.6 732,279 + -0.7 732,352 + -3.0 732,353 - -2.8 732,353 - +0.1 732,355 - +1.0 732,355 - -1.8 732,439 + +0.1
Or see this region's nucleotide sequence