Experiment: Amylose from potato 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04515 and HMPREF1058_RS20295 are separated by 121 nucleotides HMPREF1058_RS20295 and HMPREF1058_RS04510 are separated by 20 nucleotides HMPREF1058_RS04510 and HMPREF1058_RS04505 are separated by 7 nucleotides HMPREF1058_RS04505 and HMPREF1058_RS04500 are separated by 91 nucleotides
HMPREF1058_RS04515: HMPREF1058_RS04515 - hypothetical protein, at 12,930 to 13,127
_RS04515
HMPREF1058_RS20295: HMPREF1058_RS20295 - hypothetical protein, at 13,249 to 13,641
_RS20295
HMPREF1058_RS04510: HMPREF1058_RS04510 - hypothetical protein, at 13,662 to 14,102
_RS04510
HMPREF1058_RS04505: HMPREF1058_RS04505 - type I restriction enzyme HsdR N-terminal domain-containing protein, at 14,110 to 15,195
_RS04505
HMPREF1058_RS04500: HMPREF1058_RS04500 - hypothetical protein, at 15,287 to 16,786
_RS04500
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 13.455 kb on + strand, within HMPREF1058_RS20295 at 13.455 kb on + strand, within HMPREF1058_RS20295 at 13.465 kb on + strand, within HMPREF1058_RS20295 at 13.466 kb on - strand, within HMPREF1058_RS20295 at 13.646 kb on + strand at 13.651 kb on - strand at 13.674 kb on - strand at 13.674 kb on - strand at 13.746 kb on - strand, within HMPREF1058_RS04510 at 13.746 kb on - strand, within HMPREF1058_RS04510 at 13.877 kb on + strand, within HMPREF1058_RS04510 at 13.879 kb on + strand, within HMPREF1058_RS04510 at 13.879 kb on + strand, within HMPREF1058_RS04510 at 13.880 kb on - strand, within HMPREF1058_RS04510 at 13.949 kb on + strand, within HMPREF1058_RS04510 at 13.950 kb on - strand, within HMPREF1058_RS04510 at 14.006 kb on - strand, within HMPREF1058_RS04510 at 14.043 kb on + strand, within HMPREF1058_RS04510 at 14.044 kb on - strand, within HMPREF1058_RS04510 at 14.045 kb on + strand, within HMPREF1058_RS04510 at 14.053 kb on - strand, within HMPREF1058_RS04510 at 14.105 kb on + strand at 14.128 kb on - strand at 14.129 kb on + strand at 14.237 kb on + strand, within HMPREF1058_RS04505 at 14.238 kb on - strand, within HMPREF1058_RS04505 at 14.238 kb on - strand, within HMPREF1058_RS04505 at 14.256 kb on - strand, within HMPREF1058_RS04505 at 14.342 kb on + strand, within HMPREF1058_RS04505 at 14.398 kb on + strand, within HMPREF1058_RS04505 at 14.399 kb on - strand, within HMPREF1058_RS04505 at 14.401 kb on + strand, within HMPREF1058_RS04505 at 14.402 kb on - strand, within HMPREF1058_RS04505 at 14.541 kb on - strand, within HMPREF1058_RS04505 at 14.627 kb on + strand, within HMPREF1058_RS04505 at 14.757 kb on + strand, within HMPREF1058_RS04505 at 14.772 kb on - strand, within HMPREF1058_RS04505 at 14.886 kb on + strand, within HMPREF1058_RS04505 at 14.908 kb on + strand, within HMPREF1058_RS04505 at 14.909 kb on - strand, within HMPREF1058_RS04505 at 14.948 kb on + strand, within HMPREF1058_RS04505 at 14.949 kb on - strand, within HMPREF1058_RS04505 at 14.953 kb on + strand, within HMPREF1058_RS04505 at 14.954 kb on - strand, within HMPREF1058_RS04505 at 15.099 kb on - strand at 15.099 kb on - strand at 15.176 kb on + strand at 15.202 kb on + strand at 15.203 kb on - strand at 15.289 kb on - strand at 15.293 kb on - strand at 15.434 kb on + strand at 15.438 kb on + strand, within HMPREF1058_RS04500 at 15.438 kb on + strand, within HMPREF1058_RS04500 at 15.483 kb on + strand, within HMPREF1058_RS04500 at 15.582 kb on + strand, within HMPREF1058_RS04500 at 15.630 kb on + strand, within HMPREF1058_RS04500 at 15.675 kb on - strand, within HMPREF1058_RS04500 at 15.677 kb on - strand, within HMPREF1058_RS04500 at 15.677 kb on - strand, within HMPREF1058_RS04500 at 15.729 kb on + strand, within HMPREF1058_RS04500 at 15.753 kb on - strand, within HMPREF1058_RS04500 at 15.812 kb on + strand, within HMPREF1058_RS04500 at 15.812 kb on + strand, within HMPREF1058_RS04500 at 15.813 kb on - strand, within HMPREF1058_RS04500 at 15.890 kb on + strand, within HMPREF1058_RS04500 at 15.932 kb on + strand, within HMPREF1058_RS04500 at 15.932 kb on + strand, within HMPREF1058_RS04500 at 15.933 kb on - strand, within HMPREF1058_RS04500 at 15.957 kb on - strand, within HMPREF1058_RS04500 at 16.037 kb on - strand, within HMPREF1058_RS04500 at 16.138 kb on - strand, within HMPREF1058_RS04500 at 16.147 kb on + strand, within HMPREF1058_RS04500 at 16.150 kb on + strand, within HMPREF1058_RS04500 at 16.150 kb on + strand, within HMPREF1058_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 5 mg/ml (C) remove 13,455 + HMPREF1058_RS20295 0.52 -1.0 13,455 + HMPREF1058_RS20295 0.52 -0.4 13,465 + HMPREF1058_RS20295 0.55 +0.1 13,466 - HMPREF1058_RS20295 0.55 -3.7 13,646 + +0.0 13,651 - +0.4 13,674 - -1.0 13,674 - -1.2 13,746 - HMPREF1058_RS04510 0.19 -2.3 13,746 - HMPREF1058_RS04510 0.19 +0.1 13,877 + HMPREF1058_RS04510 0.49 -1.9 13,879 + HMPREF1058_RS04510 0.49 -0.4 13,879 + HMPREF1058_RS04510 0.49 -3.6 13,880 - HMPREF1058_RS04510 0.49 -2.9 13,949 + HMPREF1058_RS04510 0.65 -1.1 13,950 - HMPREF1058_RS04510 0.65 -0.4 14,006 - HMPREF1058_RS04510 0.78 +2.0 14,043 + HMPREF1058_RS04510 0.86 +0.6 14,044 - HMPREF1058_RS04510 0.87 +0.9 14,045 + HMPREF1058_RS04510 0.87 +0.2 14,053 - HMPREF1058_RS04510 0.89 -1.9 14,105 + +2.5 14,128 - -0.5 14,129 + -0.1 14,237 + HMPREF1058_RS04505 0.12 -1.5 14,238 - HMPREF1058_RS04505 0.12 -0.5 14,238 - HMPREF1058_RS04505 0.12 +1.9 14,256 - HMPREF1058_RS04505 0.13 +2.4 14,342 + HMPREF1058_RS04505 0.21 -0.1 14,398 + HMPREF1058_RS04505 0.27 -0.4 14,399 - HMPREF1058_RS04505 0.27 -1.3 14,401 + HMPREF1058_RS04505 0.27 +2.1 14,402 - HMPREF1058_RS04505 0.27 -0.3 14,541 - HMPREF1058_RS04505 0.40 +0.4 14,627 + HMPREF1058_RS04505 0.48 +0.3 14,757 + HMPREF1058_RS04505 0.60 -1.9 14,772 - HMPREF1058_RS04505 0.61 -0.1 14,886 + HMPREF1058_RS04505 0.71 -0.3 14,908 + HMPREF1058_RS04505 0.73 -1.5 14,909 - HMPREF1058_RS04505 0.74 +2.3 14,948 + HMPREF1058_RS04505 0.77 -0.9 14,949 - HMPREF1058_RS04505 0.77 +1.1 14,953 + HMPREF1058_RS04505 0.78 -0.2 14,954 - HMPREF1058_RS04505 0.78 +1.2 15,099 - -0.1 15,099 - +2.7 15,176 + -1.3 15,202 + -0.9 15,203 - -0.0 15,289 - -0.6 15,293 - +0.6 15,434 + +1.5 15,438 + HMPREF1058_RS04500 0.10 -4.0 15,438 + HMPREF1058_RS04500 0.10 +0.9 15,483 + HMPREF1058_RS04500 0.13 +1.6 15,582 + HMPREF1058_RS04500 0.20 -1.3 15,630 + HMPREF1058_RS04500 0.23 +0.9 15,675 - HMPREF1058_RS04500 0.26 -1.4 15,677 - HMPREF1058_RS04500 0.26 -2.9 15,677 - HMPREF1058_RS04500 0.26 +0.9 15,729 + HMPREF1058_RS04500 0.29 +2.5 15,753 - HMPREF1058_RS04500 0.31 -2.0 15,812 + HMPREF1058_RS04500 0.35 +0.8 15,812 + HMPREF1058_RS04500 0.35 +0.3 15,813 - HMPREF1058_RS04500 0.35 +0.3 15,890 + HMPREF1058_RS04500 0.40 +0.7 15,932 + HMPREF1058_RS04500 0.43 -1.2 15,932 + HMPREF1058_RS04500 0.43 +0.7 15,933 - HMPREF1058_RS04500 0.43 -2.5 15,957 - HMPREF1058_RS04500 0.45 +1.8 16,037 - HMPREF1058_RS04500 0.50 -2.6 16,138 - HMPREF1058_RS04500 0.57 -0.5 16,147 + HMPREF1058_RS04500 0.57 +0.6 16,150 + HMPREF1058_RS04500 0.58 -0.4 16,150 + HMPREF1058_RS04500 0.58 -0.7
Or see this region's nucleotide sequence