Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02136

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02134 and CCNA_02135 are separated by 6 nucleotidesCCNA_02135 and CCNA_02136 are separated by 2 nucleotidesCCNA_02136 and CCNA_02137 are separated by 281 nucleotides CCNA_02134: CCNA_02134 - phosphogluconate dehydratase, at 2,290,257 to 2,292,065 _02134 CCNA_02135: CCNA_02135 - 6-phosphogluconolactonase, at 2,292,072 to 2,292,770 _02135 CCNA_02136: CCNA_02136 - glucose-6-phosphate 1-dehydrogenase, at 2,292,773 to 2,294,236 _02136 CCNA_02137: CCNA_02137 - endoglucanase H, at 2,294,518 to 2,297,394 _02137 Position (kb) 2292 2293 2294 2295Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2291.777 kb on - strand, within CCNA_02134at 2291.782 kb on + strand, within CCNA_02134at 2291.782 kb on + strand, within CCNA_02134at 2291.782 kb on + strand, within CCNA_02134at 2291.790 kb on - strand, within CCNA_02134at 2291.790 kb on - strand, within CCNA_02134at 2291.790 kb on - strand, within CCNA_02134at 2291.790 kb on - strand, within CCNA_02134at 2291.797 kb on + strand, within CCNA_02134at 2291.800 kb on - strand, within CCNA_02134at 2291.829 kb on - strand, within CCNA_02134at 2291.877 kb on - strand, within CCNA_02134at 2291.924 kb on - strandat 2291.932 kb on + strandat 2291.935 kb on - strandat 2291.940 kb on - strandat 2291.940 kb on - strandat 2291.940 kb on - strandat 2291.940 kb on - strandat 2291.940 kb on - strandat 2291.960 kb on - strandat 2291.988 kb on - strandat 2292.009 kb on - strandat 2292.069 kb on + strandat 2292.082 kb on - strandat 2292.095 kb on - strandat 2292.108 kb on - strandat 2292.143 kb on - strand, within CCNA_02135at 2292.164 kb on - strand, within CCNA_02135at 2292.186 kb on + strand, within CCNA_02135at 2292.210 kb on + strand, within CCNA_02135at 2292.213 kb on - strand, within CCNA_02135at 2292.213 kb on - strand, within CCNA_02135at 2292.218 kb on - strand, within CCNA_02135at 2292.232 kb on - strand, within CCNA_02135at 2292.292 kb on + strand, within CCNA_02135at 2292.300 kb on + strand, within CCNA_02135at 2292.307 kb on + strand, within CCNA_02135at 2292.307 kb on - strand, within CCNA_02135at 2292.308 kb on - strand, within CCNA_02135at 2292.315 kb on - strand, within CCNA_02135at 2292.367 kb on - strand, within CCNA_02135at 2292.399 kb on + strand, within CCNA_02135at 2292.405 kb on - strand, within CCNA_02135at 2292.515 kb on - strand, within CCNA_02135at 2292.515 kb on - strand, within CCNA_02135at 2292.561 kb on + strand, within CCNA_02135at 2292.571 kb on - strand, within CCNA_02135at 2292.576 kb on - strand, within CCNA_02135at 2292.609 kb on + strand, within CCNA_02135at 2292.609 kb on + strand, within CCNA_02135at 2292.617 kb on - strand, within CCNA_02135at 2292.681 kb on + strand, within CCNA_02135at 2292.701 kb on - strandat 2292.701 kb on - strandat 2292.706 kb on - strandat 2292.706 kb on - strandat 2292.715 kb on + strandat 2292.715 kb on + strandat 2292.715 kb on + strandat 2292.723 kb on - strandat 2292.756 kb on - strandat 2292.756 kb on - strandat 2292.756 kb on - strandat 2292.759 kb on + strandat 2294.294 kb on - strandat 2294.299 kb on - strandat 2294.316 kb on - strandat 2294.330 kb on + strandat 2294.330 kb on + strandat 2294.330 kb on + strandat 2294.330 kb on + strandat 2294.330 kb on + strandat 2294.330 kb on + strandat 2294.330 kb on + strandat 2294.330 kb on + strandat 2294.338 kb on - strandat 2294.338 kb on - strandat 2294.338 kb on - strandat 2294.338 kb on - strandat 2294.338 kb on - strandat 2294.338 kb on - strandat 2294.338 kb on - strandat 2294.487 kb on - strandat 2294.487 kb on - strandat 2294.487 kb on - strandat 2294.504 kb on - strandat 2294.612 kb on + strandat 2294.622 kb on + strandat 2294.658 kb on - strandat 2294.662 kb on + strandat 2294.662 kb on + strandat 2294.662 kb on + strandat 2294.667 kb on - strandat 2294.670 kb on - strandat 2294.670 kb on - strandat 2294.670 kb on - strandat 2294.674 kb on + strandat 2294.688 kb on - strandat 2294.762 kb on + strandat 2294.764 kb on - strandat 2294.770 kb on - strandat 2294.822 kb on + strand, within CCNA_02137at 2294.822 kb on + strand, within CCNA_02137at 2294.830 kb on - strand, within CCNA_02137at 2294.837 kb on + strand, within CCNA_02137at 2294.883 kb on + strand, within CCNA_02137at 2294.947 kb on - strand, within CCNA_02137at 2294.973 kb on - strand, within CCNA_02137at 2294.982 kb on - strand, within CCNA_02137at 2295.000 kb on - strand, within CCNA_02137at 2295.045 kb on + strand, within CCNA_02137at 2295.094 kb on - strand, within CCNA_02137at 2295.095 kb on - strand, within CCNA_02137at 2295.105 kb on - strand, within CCNA_02137at 2295.142 kb on + strand, within CCNA_02137at 2295.150 kb on - strand, within CCNA_02137at 2295.184 kb on - strand, within CCNA_02137at 2295.186 kb on + strand, within CCNA_02137at 2295.194 kb on - strand, within CCNA_02137

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,291,777 - CCNA_02134 0.84 +2.6
2,291,782 + CCNA_02134 0.84 +0.0
2,291,782 + CCNA_02134 0.84 -0.2
2,291,782 + CCNA_02134 0.84 -2.1
2,291,790 - CCNA_02134 0.85 +1.1
2,291,790 - CCNA_02134 0.85 +3.8
2,291,790 - CCNA_02134 0.85 +1.2
2,291,790 - CCNA_02134 0.85 +1.5
2,291,797 + CCNA_02134 0.85 -0.3
2,291,800 - CCNA_02134 0.85 +1.8
2,291,829 - CCNA_02134 0.87 +1.3
2,291,877 - CCNA_02134 0.90 +1.9
2,291,924 - +1.9
2,291,932 + -2.1
2,291,935 - +1.7
2,291,940 - +0.2
2,291,940 - +1.5
2,291,940 - +1.1
2,291,940 - +0.8
2,291,940 - +1.2
2,291,960 - +2.4
2,291,988 - +1.3
2,292,009 - +0.7
2,292,069 + +0.4
2,292,082 - +0.7
2,292,095 - +0.2
2,292,108 - +0.6
2,292,143 - CCNA_02135 0.10 +2.6
2,292,164 - CCNA_02135 0.13 +0.1
2,292,186 + CCNA_02135 0.16 -1.0
2,292,210 + CCNA_02135 0.20 -0.6
2,292,213 - CCNA_02135 0.20 +1.1
2,292,213 - CCNA_02135 0.20 +1.2
2,292,218 - CCNA_02135 0.21 +0.5
2,292,232 - CCNA_02135 0.23 +1.4
2,292,292 + CCNA_02135 0.31 -3.1
2,292,300 + CCNA_02135 0.33 -2.0
2,292,307 + CCNA_02135 0.34 -1.5
2,292,307 - CCNA_02135 0.34 +0.2
2,292,308 - CCNA_02135 0.34 +1.0
2,292,315 - CCNA_02135 0.35 +2.0
2,292,367 - CCNA_02135 0.42 +1.5
2,292,399 + CCNA_02135 0.47 +1.2
2,292,405 - CCNA_02135 0.48 +0.2
2,292,515 - CCNA_02135 0.63 +2.1
2,292,515 - CCNA_02135 0.63 +1.7
2,292,561 + CCNA_02135 0.70 -2.3
2,292,571 - CCNA_02135 0.71 +0.7
2,292,576 - CCNA_02135 0.72 +1.5
2,292,609 + CCNA_02135 0.77 +0.0
2,292,609 + CCNA_02135 0.77 -0.4
2,292,617 - CCNA_02135 0.78 +1.6
2,292,681 + CCNA_02135 0.87 -1.0
2,292,701 - +3.1
2,292,701 - +1.9
2,292,706 - +1.3
2,292,706 - +2.3
2,292,715 + -1.1
2,292,715 + -0.2
2,292,715 + -2.5
2,292,723 - +1.6
2,292,756 - +1.3
2,292,756 - +0.7
2,292,756 - +1.1
2,292,759 + +1.1
2,294,294 - +3.1
2,294,299 - -0.3
2,294,316 - -0.1
2,294,330 + -1.5
2,294,330 + -2.9
2,294,330 + -1.2
2,294,330 + -1.5
2,294,330 + -2.4
2,294,330 + -1.3
2,294,330 + -1.2
2,294,330 + -0.7
2,294,338 - +0.3
2,294,338 - -0.4
2,294,338 - +1.9
2,294,338 - -0.7
2,294,338 - +0.4
2,294,338 - -0.3
2,294,338 - +0.1
2,294,487 - -1.6
2,294,487 - +0.3
2,294,487 - +0.9
2,294,504 - -1.0
2,294,612 + +0.0
2,294,622 + -2.8
2,294,658 - -0.8
2,294,662 + -2.0
2,294,662 + -0.8
2,294,662 + -0.6
2,294,667 - +0.3
2,294,670 - +0.5
2,294,670 - -1.1
2,294,670 - -2.7
2,294,674 + -1.4
2,294,688 - -0.1
2,294,762 + -3.1
2,294,764 - -0.2
2,294,770 - -0.1
2,294,822 + CCNA_02137 0.11 -0.3
2,294,822 + CCNA_02137 0.11 -2.3
2,294,830 - CCNA_02137 0.11 +2.0
2,294,837 + CCNA_02137 0.11 -1.2
2,294,883 + CCNA_02137 0.13 -2.3
2,294,947 - CCNA_02137 0.15 +0.5
2,294,973 - CCNA_02137 0.16 +0.7
2,294,982 - CCNA_02137 0.16 +0.8
2,295,000 - CCNA_02137 0.17 +1.3
2,295,045 + CCNA_02137 0.18 -1.6
2,295,094 - CCNA_02137 0.20 +1.1
2,295,095 - CCNA_02137 0.20 +1.0
2,295,105 - CCNA_02137 0.20 +2.2
2,295,142 + CCNA_02137 0.22 -0.8
2,295,150 - CCNA_02137 0.22 -1.0
2,295,184 - CCNA_02137 0.23 -1.3
2,295,186 + CCNA_02137 0.23 -1.8
2,295,194 - CCNA_02137 0.23 -1.3

Or see this region's nucleotide sequence