Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02134 and CCNA_02135 are separated by 6 nucleotides CCNA_02135 and CCNA_02136 are separated by 2 nucleotides CCNA_02136 and CCNA_02137 are separated by 281 nucleotides
CCNA_02134: CCNA_02134 - phosphogluconate dehydratase, at 2,290,257 to 2,292,065
_02134
CCNA_02135: CCNA_02135 - 6-phosphogluconolactonase, at 2,292,072 to 2,292,770
_02135
CCNA_02136: CCNA_02136 - glucose-6-phosphate 1-dehydrogenase, at 2,292,773 to 2,294,236
_02136
CCNA_02137: CCNA_02137 - endoglucanase H, at 2,294,518 to 2,297,394
_02137
Position (kb)
2292
2293
2294
2295 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2291.777 kb on - strand, within CCNA_02134 at 2291.782 kb on + strand, within CCNA_02134 at 2291.782 kb on + strand, within CCNA_02134 at 2291.782 kb on + strand, within CCNA_02134 at 2291.790 kb on - strand, within CCNA_02134 at 2291.790 kb on - strand, within CCNA_02134 at 2291.790 kb on - strand, within CCNA_02134 at 2291.790 kb on - strand, within CCNA_02134 at 2291.797 kb on + strand, within CCNA_02134 at 2291.800 kb on - strand, within CCNA_02134 at 2291.829 kb on - strand, within CCNA_02134 at 2291.877 kb on - strand, within CCNA_02134 at 2291.924 kb on - strand at 2291.932 kb on + strand at 2291.935 kb on - strand at 2291.940 kb on - strand at 2291.940 kb on - strand at 2291.940 kb on - strand at 2291.940 kb on - strand at 2291.940 kb on - strand at 2291.960 kb on - strand at 2291.988 kb on - strand at 2292.009 kb on - strand at 2292.069 kb on + strand at 2292.082 kb on - strand at 2292.095 kb on - strand at 2292.108 kb on - strand at 2292.143 kb on - strand, within CCNA_02135 at 2292.164 kb on - strand, within CCNA_02135 at 2292.186 kb on + strand, within CCNA_02135 at 2292.210 kb on + strand, within CCNA_02135 at 2292.213 kb on - strand, within CCNA_02135 at 2292.213 kb on - strand, within CCNA_02135 at 2292.218 kb on - strand, within CCNA_02135 at 2292.232 kb on - strand, within CCNA_02135 at 2292.292 kb on + strand, within CCNA_02135 at 2292.300 kb on + strand, within CCNA_02135 at 2292.307 kb on + strand, within CCNA_02135 at 2292.307 kb on - strand, within CCNA_02135 at 2292.308 kb on - strand, within CCNA_02135 at 2292.315 kb on - strand, within CCNA_02135 at 2292.367 kb on - strand, within CCNA_02135 at 2292.399 kb on + strand, within CCNA_02135 at 2292.405 kb on - strand, within CCNA_02135 at 2292.515 kb on - strand, within CCNA_02135 at 2292.515 kb on - strand, within CCNA_02135 at 2292.561 kb on + strand, within CCNA_02135 at 2292.571 kb on - strand, within CCNA_02135 at 2292.576 kb on - strand, within CCNA_02135 at 2292.609 kb on + strand, within CCNA_02135 at 2292.609 kb on + strand, within CCNA_02135 at 2292.617 kb on - strand, within CCNA_02135 at 2292.681 kb on + strand, within CCNA_02135 at 2292.701 kb on - strand at 2292.701 kb on - strand at 2292.706 kb on - strand at 2292.706 kb on - strand at 2292.715 kb on + strand at 2292.715 kb on + strand at 2292.715 kb on + strand at 2292.723 kb on - strand at 2292.756 kb on - strand at 2292.756 kb on - strand at 2292.756 kb on - strand at 2292.759 kb on + strand at 2294.294 kb on - strand at 2294.299 kb on - strand at 2294.316 kb on - strand at 2294.330 kb on + strand at 2294.330 kb on + strand at 2294.330 kb on + strand at 2294.330 kb on + strand at 2294.330 kb on + strand at 2294.330 kb on + strand at 2294.330 kb on + strand at 2294.330 kb on + strand at 2294.338 kb on - strand at 2294.338 kb on - strand at 2294.338 kb on - strand at 2294.338 kb on - strand at 2294.338 kb on - strand at 2294.338 kb on - strand at 2294.338 kb on - strand at 2294.487 kb on - strand at 2294.487 kb on - strand at 2294.487 kb on - strand at 2294.504 kb on - strand at 2294.612 kb on + strand at 2294.622 kb on + strand at 2294.658 kb on - strand at 2294.662 kb on + strand at 2294.662 kb on + strand at 2294.662 kb on + strand at 2294.667 kb on - strand at 2294.670 kb on - strand at 2294.670 kb on - strand at 2294.670 kb on - strand at 2294.674 kb on + strand at 2294.688 kb on - strand at 2294.762 kb on + strand at 2294.764 kb on - strand at 2294.770 kb on - strand at 2294.822 kb on + strand, within CCNA_02137 at 2294.822 kb on + strand, within CCNA_02137 at 2294.830 kb on - strand, within CCNA_02137 at 2294.837 kb on + strand, within CCNA_02137 at 2294.883 kb on + strand, within CCNA_02137 at 2294.947 kb on - strand, within CCNA_02137 at 2294.973 kb on - strand, within CCNA_02137 at 2294.982 kb on - strand, within CCNA_02137 at 2295.000 kb on - strand, within CCNA_02137 at 2295.045 kb on + strand, within CCNA_02137 at 2295.094 kb on - strand, within CCNA_02137 at 2295.095 kb on - strand, within CCNA_02137 at 2295.105 kb on - strand, within CCNA_02137 at 2295.142 kb on + strand, within CCNA_02137 at 2295.150 kb on - strand, within CCNA_02137 at 2295.184 kb on - strand, within CCNA_02137 at 2295.186 kb on + strand, within CCNA_02137 at 2295.194 kb on - strand, within CCNA_02137
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 2,291,777 - CCNA_02134 0.84 +2.6 2,291,782 + CCNA_02134 0.84 +0.0 2,291,782 + CCNA_02134 0.84 -0.2 2,291,782 + CCNA_02134 0.84 -2.1 2,291,790 - CCNA_02134 0.85 +1.1 2,291,790 - CCNA_02134 0.85 +3.8 2,291,790 - CCNA_02134 0.85 +1.2 2,291,790 - CCNA_02134 0.85 +1.5 2,291,797 + CCNA_02134 0.85 -0.3 2,291,800 - CCNA_02134 0.85 +1.8 2,291,829 - CCNA_02134 0.87 +1.3 2,291,877 - CCNA_02134 0.90 +1.9 2,291,924 - +1.9 2,291,932 + -2.1 2,291,935 - +1.7 2,291,940 - +0.2 2,291,940 - +1.5 2,291,940 - +1.1 2,291,940 - +0.8 2,291,940 - +1.2 2,291,960 - +2.4 2,291,988 - +1.3 2,292,009 - +0.7 2,292,069 + +0.4 2,292,082 - +0.7 2,292,095 - +0.2 2,292,108 - +0.6 2,292,143 - CCNA_02135 0.10 +2.6 2,292,164 - CCNA_02135 0.13 +0.1 2,292,186 + CCNA_02135 0.16 -1.0 2,292,210 + CCNA_02135 0.20 -0.6 2,292,213 - CCNA_02135 0.20 +1.1 2,292,213 - CCNA_02135 0.20 +1.2 2,292,218 - CCNA_02135 0.21 +0.5 2,292,232 - CCNA_02135 0.23 +1.4 2,292,292 + CCNA_02135 0.31 -3.1 2,292,300 + CCNA_02135 0.33 -2.0 2,292,307 + CCNA_02135 0.34 -1.5 2,292,307 - CCNA_02135 0.34 +0.2 2,292,308 - CCNA_02135 0.34 +1.0 2,292,315 - CCNA_02135 0.35 +2.0 2,292,367 - CCNA_02135 0.42 +1.5 2,292,399 + CCNA_02135 0.47 +1.2 2,292,405 - CCNA_02135 0.48 +0.2 2,292,515 - CCNA_02135 0.63 +2.1 2,292,515 - CCNA_02135 0.63 +1.7 2,292,561 + CCNA_02135 0.70 -2.3 2,292,571 - CCNA_02135 0.71 +0.7 2,292,576 - CCNA_02135 0.72 +1.5 2,292,609 + CCNA_02135 0.77 +0.0 2,292,609 + CCNA_02135 0.77 -0.4 2,292,617 - CCNA_02135 0.78 +1.6 2,292,681 + CCNA_02135 0.87 -1.0 2,292,701 - +3.1 2,292,701 - +1.9 2,292,706 - +1.3 2,292,706 - +2.3 2,292,715 + -1.1 2,292,715 + -0.2 2,292,715 + -2.5 2,292,723 - +1.6 2,292,756 - +1.3 2,292,756 - +0.7 2,292,756 - +1.1 2,292,759 + +1.1 2,294,294 - +3.1 2,294,299 - -0.3 2,294,316 - -0.1 2,294,330 + -1.5 2,294,330 + -2.9 2,294,330 + -1.2 2,294,330 + -1.5 2,294,330 + -2.4 2,294,330 + -1.3 2,294,330 + -1.2 2,294,330 + -0.7 2,294,338 - +0.3 2,294,338 - -0.4 2,294,338 - +1.9 2,294,338 - -0.7 2,294,338 - +0.4 2,294,338 - -0.3 2,294,338 - +0.1 2,294,487 - -1.6 2,294,487 - +0.3 2,294,487 - +0.9 2,294,504 - -1.0 2,294,612 + +0.0 2,294,622 + -2.8 2,294,658 - -0.8 2,294,662 + -2.0 2,294,662 + -0.8 2,294,662 + -0.6 2,294,667 - +0.3 2,294,670 - +0.5 2,294,670 - -1.1 2,294,670 - -2.7 2,294,674 + -1.4 2,294,688 - -0.1 2,294,762 + -3.1 2,294,764 - -0.2 2,294,770 - -0.1 2,294,822 + CCNA_02137 0.11 -0.3 2,294,822 + CCNA_02137 0.11 -2.3 2,294,830 - CCNA_02137 0.11 +2.0 2,294,837 + CCNA_02137 0.11 -1.2 2,294,883 + CCNA_02137 0.13 -2.3 2,294,947 - CCNA_02137 0.15 +0.5 2,294,973 - CCNA_02137 0.16 +0.7 2,294,982 - CCNA_02137 0.16 +0.8 2,295,000 - CCNA_02137 0.17 +1.3 2,295,045 + CCNA_02137 0.18 -1.6 2,295,094 - CCNA_02137 0.20 +1.1 2,295,095 - CCNA_02137 0.20 +1.0 2,295,105 - CCNA_02137 0.20 +2.2 2,295,142 + CCNA_02137 0.22 -0.8 2,295,150 - CCNA_02137 0.22 -1.0 2,295,184 - CCNA_02137 0.23 -1.3 2,295,186 + CCNA_02137 0.23 -1.8 2,295,194 - CCNA_02137 0.23 -1.3
Or see this region's nucleotide sequence