Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01723

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01721 and CCNA_01722 overlap by 32 nucleotidesCCNA_01722 and CCNA_01723 are separated by 92 nucleotidesCCNA_01723 and CCNA_01724 are separated by 152 nucleotidesCCNA_01724 and CCNA_01725 overlap by 4 nucleotides CCNA_01721: CCNA_01721 - RNA polymerase ECF sigma factor, at 1,848,549 to 1,849,133 _01721 CCNA_01722: CCNA_01722 - hypothetical protein, at 1,849,102 to 1,849,506 _01722 CCNA_01723: CCNA_01723 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,849,599 to 1,850,426 _01723 CCNA_01724: CCNA_01724 - hypothetical protein, at 1,850,579 to 1,851,331 _01724 CCNA_01725: CCNA_01725 - beta-barrel assembly machine (BAM) protein BamB, at 1,851,328 to 1,852,758 _01725 Position (kb) 1849 1850 1851Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1848.614 kb on - strand, within CCNA_01721at 1848.629 kb on + strand, within CCNA_01721at 1848.666 kb on + strand, within CCNA_01721at 1848.674 kb on - strand, within CCNA_01721at 1848.675 kb on - strand, within CCNA_01721at 1848.731 kb on + strand, within CCNA_01721at 1848.812 kb on + strand, within CCNA_01721at 1848.812 kb on + strand, within CCNA_01721at 1848.820 kb on - strand, within CCNA_01721at 1848.820 kb on - strand, within CCNA_01721at 1848.827 kb on + strand, within CCNA_01721at 1848.881 kb on - strand, within CCNA_01721at 1848.936 kb on + strand, within CCNA_01721at 1848.936 kb on + strand, within CCNA_01721at 1848.988 kb on + strand, within CCNA_01721at 1849.044 kb on + strand, within CCNA_01721at 1849.052 kb on - strand, within CCNA_01721at 1849.122 kb on + strandat 1849.122 kb on + strandat 1849.122 kb on + strandat 1849.122 kb on + strandat 1849.130 kb on - strandat 1849.198 kb on + strandat 1849.200 kb on + strand, within CCNA_01722at 1849.277 kb on + strand, within CCNA_01722at 1849.282 kb on + strand, within CCNA_01722at 1849.282 kb on + strand, within CCNA_01722at 1849.520 kb on + strandat 1850.421 kb on + strandat 1850.454 kb on + strandat 1850.454 kb on + strandat 1850.456 kb on + strandat 1850.462 kb on - strandat 1850.503 kb on + strandat 1850.526 kb on + strandat 1850.569 kb on + strandat 1850.623 kb on + strandat 1850.653 kb on + strandat 1850.743 kb on + strand, within CCNA_01724at 1850.812 kb on + strand, within CCNA_01724at 1850.974 kb on + strand, within CCNA_01724at 1851.244 kb on - strand, within CCNA_01724at 1851.244 kb on - strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,848,614 - CCNA_01721 0.11 -0.5
1,848,629 + CCNA_01721 0.14 -0.6
1,848,666 + CCNA_01721 0.20 +1.2
1,848,674 - CCNA_01721 0.21 -0.2
1,848,675 - CCNA_01721 0.22 -0.5
1,848,731 + CCNA_01721 0.31 +1.7
1,848,812 + CCNA_01721 0.45 +1.1
1,848,812 + CCNA_01721 0.45 +1.8
1,848,820 - CCNA_01721 0.46 +1.4
1,848,820 - CCNA_01721 0.46 -1.8
1,848,827 + CCNA_01721 0.48 -0.2
1,848,881 - CCNA_01721 0.57 -0.9
1,848,936 + CCNA_01721 0.66 +1.6
1,848,936 + CCNA_01721 0.66 +2.3
1,848,988 + CCNA_01721 0.75 +2.3
1,849,044 + CCNA_01721 0.85 +0.1
1,849,052 - CCNA_01721 0.86 -2.2
1,849,122 + +0.4
1,849,122 + -0.0
1,849,122 + +0.3
1,849,122 + +0.0
1,849,130 - +0.0
1,849,198 + +1.5
1,849,200 + CCNA_01722 0.24 -1.6
1,849,277 + CCNA_01722 0.43 +0.1
1,849,282 + CCNA_01722 0.44 +0.5
1,849,282 + CCNA_01722 0.44 -1.0
1,849,520 + +2.0
1,850,421 + +0.5
1,850,454 + +0.2
1,850,454 + +1.4
1,850,456 + +2.1
1,850,462 - +0.1
1,850,503 + -2.9
1,850,526 + -2.2
1,850,569 + -0.7
1,850,623 + -2.8
1,850,653 + -1.7
1,850,743 + CCNA_01724 0.22 +0.1
1,850,812 + CCNA_01724 0.31 -2.4
1,850,974 + CCNA_01724 0.52 -1.0
1,851,244 - CCNA_01724 0.88 -0.6
1,851,244 - CCNA_01724 0.88 -0.9
1,851,250 + CCNA_01724 0.89 -3.2
1,851,250 + CCNA_01724 0.89 +0.8
1,851,250 + CCNA_01724 0.89 -1.5

Or see this region's nucleotide sequence