Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12170

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12165 and BPHYT_RS12170 are separated by 190 nucleotidesBPHYT_RS12170 and BPHYT_RS12175 are separated by 116 nucleotides BPHYT_RS12165: BPHYT_RS12165 - DNA ligase, at 2,773,742 to 2,775,808 _RS12165 BPHYT_RS12170: BPHYT_RS12170 - cell division protein FtsZ, at 2,775,999 to 2,777,288 _RS12170 BPHYT_RS12175: BPHYT_RS12175 - chromosome segregation protein SMC, at 2,777,405 to 2,780,923 _RS12175 Position (kb) 2775 2776 2777 2778Strain fitness (log2 ratio) -1 0 1at 2775.870 kb on + strandat 2775.870 kb on + strandat 2775.871 kb on - strandat 2775.978 kb on + strandat 2775.978 kb on + strandat 2775.978 kb on + strandat 2775.979 kb on - strandat 2775.979 kb on - strandat 2775.984 kb on + strandat 2777.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,775,870 + +0.1
2,775,870 + -1.0
2,775,871 - +0.1
2,775,978 + +0.2
2,775,978 + -1.1
2,775,978 + +0.4
2,775,979 - +0.3
2,775,979 - -0.9
2,775,984 + -0.2
2,777,414 - -0.6

Or see this region's nucleotide sequence