Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28020

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28015 and AO356_28020 overlap by 17 nucleotidesAO356_28020 and AO356_28025 are separated by 461 nucleotides AO356_28015: AO356_28015 - histidine kinase, at 6,396,136 to 6,397,506 _28015 AO356_28020: AO356_28020 - ethanol oxidation regulatory protein ercA (from data), at 6,397,490 to 6,398,668 _28020 AO356_28025: AO356_28025 - aldehyde dehydrogenase, at 6,399,130 to 6,400,650 _28025 Position (kb) 6397 6398 6399Strain fitness (log2 ratio) -1 0 1at 6396.833 kb on + strand, within AO356_28015at 6396.868 kb on - strand, within AO356_28015at 6397.205 kb on + strand, within AO356_28015at 6397.206 kb on - strand, within AO356_28015at 6397.206 kb on - strand, within AO356_28015at 6397.206 kb on - strand, within AO356_28015at 6397.267 kb on + strand, within AO356_28015at 6397.764 kb on + strand, within AO356_28020at 6397.764 kb on + strand, within AO356_28020at 6397.764 kb on + strand, within AO356_28020at 6397.764 kb on + strand, within AO356_28020at 6398.293 kb on + strand, within AO356_28020at 6398.448 kb on + strand, within AO356_28020at 6398.449 kb on - strand, within AO356_28020at 6398.449 kb on - strand, within AO356_28020at 6398.568 kb on + strandat 6398.657 kb on + strandat 6398.657 kb on + strandat 6398.658 kb on - strandat 6398.673 kb on - strandat 6398.684 kb on + strandat 6398.708 kb on + strandat 6398.796 kb on + strandat 6398.796 kb on + strandat 6398.796 kb on + strandat 6398.796 kb on + strandat 6398.796 kb on + strandat 6398.796 kb on + strandat 6398.797 kb on - strandat 6398.832 kb on + strandat 6398.870 kb on + strandat 6398.926 kb on - strandat 6398.957 kb on - strandat 6399.001 kb on + strandat 6399.114 kb on + strandat 6399.114 kb on + strandat 6399.114 kb on + strandat 6399.114 kb on + strandat 6399.115 kb on - strandat 6399.115 kb on - strandat 6399.239 kb on + strandat 6399.500 kb on + strand, within AO356_28025at 6399.500 kb on + strand, within AO356_28025at 6399.500 kb on + strand, within AO356_28025at 6399.500 kb on + strand, within AO356_28025at 6399.501 kb on - strand, within AO356_28025at 6399.501 kb on - strand, within AO356_28025at 6399.501 kb on - strand, within AO356_28025at 6399.501 kb on - strand, within AO356_28025at 6399.501 kb on - strand, within AO356_28025at 6399.587 kb on + strand, within AO356_28025at 6399.606 kb on - strand, within AO356_28025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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6,396,833 + AO356_28015 0.51 -0.4
6,396,868 - AO356_28015 0.53 -0.3
6,397,205 + AO356_28015 0.78 -0.5
6,397,206 - AO356_28015 0.78 -1.3
6,397,206 - AO356_28015 0.78 -0.2
6,397,206 - AO356_28015 0.78 +0.2
6,397,267 + AO356_28015 0.82 -0.2
6,397,764 + AO356_28020 0.23 +1.2
6,397,764 + AO356_28020 0.23 +0.1
6,397,764 + AO356_28020 0.23 +1.0
6,397,764 + AO356_28020 0.23 +0.4
6,398,293 + AO356_28020 0.68 +1.4
6,398,448 + AO356_28020 0.81 -0.5
6,398,449 - AO356_28020 0.81 +0.6
6,398,449 - AO356_28020 0.81 +0.3
6,398,568 + +1.5
6,398,657 + +0.9
6,398,657 + -0.3
6,398,658 - -0.2
6,398,673 - -0.5
6,398,684 + -0.5
6,398,708 + +1.3
6,398,796 + +0.1
6,398,796 + +0.7
6,398,796 + +0.0
6,398,796 + -1.1
6,398,796 + +0.2
6,398,796 + +0.1
6,398,797 - -0.6
6,398,832 + +0.8
6,398,870 + -0.3
6,398,926 - -0.8
6,398,957 - -1.0
6,399,001 + +0.1
6,399,114 + -0.1
6,399,114 + -0.4
6,399,114 + -0.1
6,399,114 + -0.3
6,399,115 - -0.1
6,399,115 - -0.4
6,399,239 + -0.9
6,399,500 + AO356_28025 0.24 +0.3
6,399,500 + AO356_28025 0.24 -0.3
6,399,500 + AO356_28025 0.24 +0.4
6,399,500 + AO356_28025 0.24 -0.5
6,399,501 - AO356_28025 0.24 +0.2
6,399,501 - AO356_28025 0.24 -0.8
6,399,501 - AO356_28025 0.24 -0.6
6,399,501 - AO356_28025 0.24 +0.6
6,399,501 - AO356_28025 0.24 +1.2
6,399,587 + AO356_28025 0.30 -0.5
6,399,606 - AO356_28025 0.31 -1.5

Or see this region's nucleotide sequence