Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28015

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28010 and AO356_28015 are separated by 283 nucleotidesAO356_28015 and AO356_28020 overlap by 17 nucleotides AO356_28010: AO356_28010 - hypothetical protein, at 6,394,647 to 6,395,852 _28010 AO356_28015: AO356_28015 - histidine kinase, at 6,396,136 to 6,397,506 _28015 AO356_28020: AO356_28020 - ethanol oxidation regulatory protein ercA (from data), at 6,397,490 to 6,398,668 _28020 Position (kb) 6396 6397 6398Strain fitness (log2 ratio) -1 0 1at 6395.215 kb on + strand, within AO356_28010at 6395.567 kb on - strand, within AO356_28010at 6395.598 kb on - strand, within AO356_28010at 6395.618 kb on + strand, within AO356_28010at 6395.619 kb on - strand, within AO356_28010at 6395.619 kb on - strand, within AO356_28010at 6395.639 kb on - strand, within AO356_28010at 6395.858 kb on + strandat 6396.066 kb on - strandat 6396.122 kb on - strandat 6396.122 kb on - strandat 6396.833 kb on + strand, within AO356_28015at 6396.868 kb on - strand, within AO356_28015at 6397.205 kb on + strand, within AO356_28015at 6397.206 kb on - strand, within AO356_28015at 6397.206 kb on - strand, within AO356_28015at 6397.206 kb on - strand, within AO356_28015at 6397.267 kb on + strand, within AO356_28015at 6397.764 kb on + strand, within AO356_28020at 6397.764 kb on + strand, within AO356_28020at 6397.764 kb on + strand, within AO356_28020at 6397.764 kb on + strand, within AO356_28020at 6398.293 kb on + strand, within AO356_28020at 6398.448 kb on + strand, within AO356_28020at 6398.449 kb on - strand, within AO356_28020at 6398.449 kb on - strand, within AO356_28020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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6,395,215 + AO356_28010 0.47 -0.2
6,395,567 - AO356_28010 0.76 -0.2
6,395,598 - AO356_28010 0.79 -1.0
6,395,618 + AO356_28010 0.81 -0.9
6,395,619 - AO356_28010 0.81 +1.0
6,395,619 - AO356_28010 0.81 +0.4
6,395,639 - AO356_28010 0.82 +0.4
6,395,858 + +0.2
6,396,066 - +0.3
6,396,122 - -0.6
6,396,122 - +0.2
6,396,833 + AO356_28015 0.51 -0.4
6,396,868 - AO356_28015 0.53 -0.3
6,397,205 + AO356_28015 0.78 -0.5
6,397,206 - AO356_28015 0.78 -1.3
6,397,206 - AO356_28015 0.78 -0.2
6,397,206 - AO356_28015 0.78 +0.2
6,397,267 + AO356_28015 0.82 -0.2
6,397,764 + AO356_28020 0.23 +1.2
6,397,764 + AO356_28020 0.23 +0.1
6,397,764 + AO356_28020 0.23 +1.0
6,397,764 + AO356_28020 0.23 +0.4
6,398,293 + AO356_28020 0.68 +1.4
6,398,448 + AO356_28020 0.81 -0.5
6,398,449 - AO356_28020 0.81 +0.6
6,398,449 - AO356_28020 0.81 +0.3

Or see this region's nucleotide sequence