Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27550

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27545 and AO356_27550 are separated by 231 nucleotidesAO356_27550 and AO356_27555 are separated by 53 nucleotides AO356_27545: AO356_27545 - peptidase, at 6,281,216 to 6,282,931 _27545 AO356_27550: AO356_27550 - 3-oxoacyl-ACP synthase, at 6,283,163 to 6,284,455 _27550 AO356_27555: AO356_27555 - multidrug transporter, at 6,284,509 to 6,287,589 _27555 Position (kb) 6283 6284 6285Strain fitness (log2 ratio) -1 0 1 2at 6282.259 kb on + strand, within AO356_27545at 6282.498 kb on + strand, within AO356_27545at 6282.798 kb on + strandat 6282.798 kb on + strandat 6282.798 kb on + strandat 6282.814 kb on - strandat 6283.005 kb on + strandat 6283.115 kb on - strandat 6283.161 kb on - strandat 6283.161 kb on - strandat 6283.421 kb on - strand, within AO356_27550at 6283.513 kb on + strand, within AO356_27550at 6283.514 kb on - strand, within AO356_27550at 6283.514 kb on - strand, within AO356_27550at 6284.477 kb on + strandat 6284.477 kb on + strandat 6284.477 kb on + strandat 6284.478 kb on - strandat 6284.478 kb on - strandat 6284.510 kb on + strandat 6284.534 kb on - strandat 6284.574 kb on - strandat 6284.574 kb on - strandat 6284.600 kb on - strandat 6284.605 kb on - strandat 6284.605 kb on - strandat 6284.620 kb on - strandat 6284.636 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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6,282,259 + AO356_27545 0.61 +0.5
6,282,498 + AO356_27545 0.75 +0.9
6,282,798 + +0.2
6,282,798 + +0.8
6,282,798 + +0.6
6,282,814 - +0.0
6,283,005 + +0.6
6,283,115 - -1.4
6,283,161 - -0.1
6,283,161 - -0.5
6,283,421 - AO356_27550 0.20 -1.1
6,283,513 + AO356_27550 0.27 +0.0
6,283,514 - AO356_27550 0.27 -1.1
6,283,514 - AO356_27550 0.27 +0.4
6,284,477 + -0.4
6,284,477 + +0.2
6,284,477 + +2.0
6,284,478 - -0.0
6,284,478 - -0.1
6,284,510 + +0.9
6,284,534 - +0.4
6,284,574 - +0.4
6,284,574 - -1.1
6,284,600 - -0.4
6,284,605 - +0.1
6,284,605 - -0.0
6,284,620 - +0.6
6,284,636 + -0.8

Or see this region's nucleotide sequence