Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05820

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05810 and AO356_05815 are separated by 2 nucleotidesAO356_05815 and AO356_05820 are separated by 100 nucleotidesAO356_05820 and AO356_05825 are separated by 7 nucleotides AO356_05810: AO356_05810 - phage tail protein, at 1,289,951 to 1,291,117 _05810 AO356_05815: AO356_05815 - hypothetical protein, at 1,291,120 to 1,291,329 _05815 AO356_05820: AO356_05820 - phage tail protein, at 1,291,430 to 1,291,849 _05820 AO356_05825: AO356_05825 - phage tail protein, at 1,291,857 to 1,293,803 _05825 Position (kb) 1291 1292Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1290.531 kb on + strand, within AO356_05810at 1290.532 kb on - strand, within AO356_05810at 1290.603 kb on + strand, within AO356_05810at 1290.603 kb on + strand, within AO356_05810at 1290.603 kb on + strand, within AO356_05810at 1290.858 kb on + strand, within AO356_05810at 1290.858 kb on + strand, within AO356_05810at 1290.858 kb on + strand, within AO356_05810at 1290.858 kb on + strand, within AO356_05810at 1290.859 kb on - strand, within AO356_05810at 1290.859 kb on - strand, within AO356_05810at 1290.892 kb on - strand, within AO356_05810at 1290.892 kb on - strand, within AO356_05810at 1291.311 kb on - strandat 1291.311 kb on - strandat 1291.331 kb on + strandat 1291.346 kb on - strandat 1291.417 kb on - strandat 1291.511 kb on - strand, within AO356_05820at 1291.511 kb on - strand, within AO356_05820at 1291.514 kb on + strand, within AO356_05820at 1291.515 kb on - strand, within AO356_05820at 1291.515 kb on - strand, within AO356_05820at 1291.545 kb on + strand, within AO356_05820at 1291.546 kb on - strand, within AO356_05820at 1291.546 kb on - strand, within AO356_05820at 1291.605 kb on - strand, within AO356_05820at 1291.618 kb on + strand, within AO356_05820at 1291.633 kb on + strand, within AO356_05820at 1291.634 kb on - strand, within AO356_05820at 1291.671 kb on - strand, within AO356_05820at 1291.779 kb on - strand, within AO356_05820at 1291.779 kb on - strand, within AO356_05820at 1291.779 kb on - strand, within AO356_05820at 1291.802 kb on + strand, within AO356_05820at 1291.803 kb on - strand, within AO356_05820at 1291.803 kb on - strand, within AO356_05820at 1291.845 kb on + strandat 1291.845 kb on + strandat 1291.849 kb on + strandat 1291.849 kb on + strandat 1291.849 kb on + strandat 1291.849 kb on + strandat 1291.849 kb on + strandat 1291.849 kb on + strandat 1291.850 kb on - strandat 1291.850 kb on - strandat 1291.850 kb on - strandat 1291.850 kb on - strandat 1291.850 kb on - strandat 1291.850 kb on - strandat 1291.850 kb on - strandat 1291.850 kb on - strandat 1291.883 kb on - strandat 1291.883 kb on - strandat 1291.883 kb on - strandat 1291.922 kb on + strandat 1291.922 kb on + strandat 1291.922 kb on + strandat 1291.923 kb on - strandat 1291.923 kb on - strandat 1291.923 kb on - strandat 1291.930 kb on + strandat 1291.930 kb on + strandat 1291.931 kb on - strandat 1291.931 kb on - strandat 1291.937 kb on + strandat 1291.937 kb on + strandat 1291.995 kb on - strandat 1291.995 kb on - strandat 1292.020 kb on + strandat 1292.020 kb on + strandat 1292.020 kb on + strandat 1292.020 kb on + strandat 1292.020 kb on + strandat 1292.020 kb on + strandat 1292.020 kb on + strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.021 kb on - strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.024 kb on + strandat 1292.025 kb on - strandat 1292.025 kb on - strandat 1292.025 kb on - strandat 1292.025 kb on - strandat 1292.124 kb on + strand, within AO356_05825at 1292.125 kb on - strand, within AO356_05825at 1292.138 kb on + strand, within AO356_05825at 1292.138 kb on + strand, within AO356_05825at 1292.138 kb on + strand, within AO356_05825at 1292.259 kb on + strand, within AO356_05825at 1292.259 kb on + strand, within AO356_05825at 1292.259 kb on + strand, within AO356_05825at 1292.259 kb on + strand, within AO356_05825at 1292.260 kb on - strand, within AO356_05825at 1292.279 kb on + strand, within AO356_05825at 1292.279 kb on + strand, within AO356_05825at 1292.279 kb on + strand, within AO356_05825at 1292.279 kb on + strand, within AO356_05825at 1292.280 kb on - strand, within AO356_05825at 1292.282 kb on + strand, within AO356_05825at 1292.282 kb on + strand, within AO356_05825at 1292.282 kb on + strand, within AO356_05825at 1292.283 kb on - strand, within AO356_05825at 1292.362 kb on - strand, within AO356_05825at 1292.385 kb on - strand, within AO356_05825at 1292.385 kb on - strand, within AO356_05825at 1292.414 kb on + strand, within AO356_05825at 1292.525 kb on + strand, within AO356_05825at 1292.525 kb on + strand, within AO356_05825at 1292.525 kb on + strand, within AO356_05825at 1292.525 kb on + strand, within AO356_05825at 1292.525 kb on + strand, within AO356_05825at 1292.525 kb on + strand, within AO356_05825at 1292.526 kb on - strand, within AO356_05825at 1292.526 kb on - strand, within AO356_05825at 1292.526 kb on - strand, within AO356_05825at 1292.615 kb on + strand, within AO356_05825at 1292.616 kb on - strand, within AO356_05825at 1292.654 kb on + strand, within AO356_05825at 1292.655 kb on - strand, within AO356_05825at 1292.655 kb on - strand, within AO356_05825at 1292.688 kb on + strand, within AO356_05825at 1292.688 kb on + strand, within AO356_05825at 1292.787 kb on - strand, within AO356_05825at 1292.814 kb on + strand, within AO356_05825at 1292.814 kb on + strand, within AO356_05825at 1292.814 kb on + strand, within AO356_05825at 1292.814 kb on + strand, within AO356_05825

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,290,531 + AO356_05810 0.50 +0.3
1,290,532 - AO356_05810 0.50 +0.3
1,290,603 + AO356_05810 0.56 +0.1
1,290,603 + AO356_05810 0.56 -0.6
1,290,603 + AO356_05810 0.56 +0.3
1,290,858 + AO356_05810 0.78 -0.1
1,290,858 + AO356_05810 0.78 +0.6
1,290,858 + AO356_05810 0.78 +0.2
1,290,858 + AO356_05810 0.78 -0.3
1,290,859 - AO356_05810 0.78 -0.7
1,290,859 - AO356_05810 0.78 -0.3
1,290,892 - AO356_05810 0.81 +0.2
1,290,892 - AO356_05810 0.81 -0.3
1,291,311 - +0.3
1,291,311 - +0.4
1,291,331 + -1.0
1,291,346 - -0.1
1,291,417 - +0.4
1,291,511 - AO356_05820 0.19 +0.7
1,291,511 - AO356_05820 0.19 +0.0
1,291,514 + AO356_05820 0.20 -0.1
1,291,515 - AO356_05820 0.20 +0.1
1,291,515 - AO356_05820 0.20 +0.4
1,291,545 + AO356_05820 0.27 -2.5
1,291,546 - AO356_05820 0.28 -0.1
1,291,546 - AO356_05820 0.28 +0.5
1,291,605 - AO356_05820 0.42 -0.1
1,291,618 + AO356_05820 0.45 +0.4
1,291,633 + AO356_05820 0.48 +0.7
1,291,634 - AO356_05820 0.49 -1.6
1,291,671 - AO356_05820 0.57 -0.1
1,291,779 - AO356_05820 0.83 -0.5
1,291,779 - AO356_05820 0.83 -0.3
1,291,779 - AO356_05820 0.83 +0.4
1,291,802 + AO356_05820 0.89 -0.5
1,291,803 - AO356_05820 0.89 -1.4
1,291,803 - AO356_05820 0.89 -0.7
1,291,845 + +0.1
1,291,845 + -0.3
1,291,849 + -0.1
1,291,849 + +0.4
1,291,849 + +0.3
1,291,849 + +0.4
1,291,849 + -0.2
1,291,849 + +0.0
1,291,850 - +0.4
1,291,850 - -0.4
1,291,850 - +0.8
1,291,850 - +0.6
1,291,850 - -0.0
1,291,850 - +0.2
1,291,850 - +0.2
1,291,850 - -0.0
1,291,883 - -0.4
1,291,883 - -0.0
1,291,883 - +1.3
1,291,922 + -0.7
1,291,922 + +0.4
1,291,922 + -1.1
1,291,923 - -1.1
1,291,923 - +0.7
1,291,923 - +0.0
1,291,930 + +0.5
1,291,930 + -0.1
1,291,931 - +0.2
1,291,931 - -0.1
1,291,937 + -2.1
1,291,937 + -0.3
1,291,995 - +1.1
1,291,995 - -0.3
1,292,020 + -0.0
1,292,020 + +1.2
1,292,020 + -0.4
1,292,020 + -0.1
1,292,020 + +0.5
1,292,020 + +0.8
1,292,020 + -1.1
1,292,021 - +0.1
1,292,021 - +0.4
1,292,021 - +0.6
1,292,021 - -1.1
1,292,021 - +0.6
1,292,021 - -0.6
1,292,021 - -0.4
1,292,021 - +0.4
1,292,021 - -0.3
1,292,021 - +0.1
1,292,021 - +3.3
1,292,024 + +0.8
1,292,024 + -0.9
1,292,024 + -0.2
1,292,024 + +0.1
1,292,024 + -0.1
1,292,024 + +0.4
1,292,024 + -0.1
1,292,024 + -0.1
1,292,024 + +1.4
1,292,024 + +1.4
1,292,024 + -0.3
1,292,024 + +0.2
1,292,025 - +1.6
1,292,025 - -0.1
1,292,025 - -0.4
1,292,025 - -0.1
1,292,124 + AO356_05825 0.14 +0.4
1,292,125 - AO356_05825 0.14 -1.1
1,292,138 + AO356_05825 0.14 +0.3
1,292,138 + AO356_05825 0.14 +0.1
1,292,138 + AO356_05825 0.14 +0.2
1,292,259 + AO356_05825 0.21 -0.1
1,292,259 + AO356_05825 0.21 +0.8
1,292,259 + AO356_05825 0.21 -0.1
1,292,259 + AO356_05825 0.21 +0.3
1,292,260 - AO356_05825 0.21 -0.3
1,292,279 + AO356_05825 0.22 -1.6
1,292,279 + AO356_05825 0.22 -0.1
1,292,279 + AO356_05825 0.22 +0.3
1,292,279 + AO356_05825 0.22 -0.9
1,292,280 - AO356_05825 0.22 +1.2
1,292,282 + AO356_05825 0.22 -0.2
1,292,282 + AO356_05825 0.22 -0.1
1,292,282 + AO356_05825 0.22 +0.1
1,292,283 - AO356_05825 0.22 +0.4
1,292,362 - AO356_05825 0.26 -0.3
1,292,385 - AO356_05825 0.27 +0.1
1,292,385 - AO356_05825 0.27 +0.2
1,292,414 + AO356_05825 0.29 +0.1
1,292,525 + AO356_05825 0.34 -0.4
1,292,525 + AO356_05825 0.34 -0.1
1,292,525 + AO356_05825 0.34 +0.6
1,292,525 + AO356_05825 0.34 -1.1
1,292,525 + AO356_05825 0.34 -0.1
1,292,525 + AO356_05825 0.34 +0.5
1,292,526 - AO356_05825 0.34 +0.5
1,292,526 - AO356_05825 0.34 -0.5
1,292,526 - AO356_05825 0.34 +2.2
1,292,615 + AO356_05825 0.39 -1.4
1,292,616 - AO356_05825 0.39 +1.1
1,292,654 + AO356_05825 0.41 +0.5
1,292,655 - AO356_05825 0.41 +0.4
1,292,655 - AO356_05825 0.41 -1.4
1,292,688 + AO356_05825 0.43 +0.3
1,292,688 + AO356_05825 0.43 +0.1
1,292,787 - AO356_05825 0.48 -0.5
1,292,814 + AO356_05825 0.49 +0.1
1,292,814 + AO356_05825 0.49 +0.2
1,292,814 + AO356_05825 0.49 -0.3
1,292,814 + AO356_05825 0.49 +2.2

Or see this region's nucleotide sequence