Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32690

Experiment: R2A with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32685 and RR42_RS32690 are separated by 77 nucleotidesRR42_RS32690 and RR42_RS32695 are separated by 409 nucleotides RR42_RS32685: RR42_RS32685 - phenol hydroxylase, at 2,727,729 to 2,728,724 _RS32685 RR42_RS32690: RR42_RS32690 - phenol hydroxylase, at 2,728,802 to 2,729,020 _RS32690 RR42_RS32695: RR42_RS32695 - Fis family transcriptional regulator, at 2,729,430 to 2,731,145 _RS32695 Position (kb) 2728 2729 2730Strain fitness (log2 ratio) -1 0 1at 2728.229 kb on - strand, within RR42_RS32685at 2728.261 kb on + strand, within RR42_RS32685at 2728.474 kb on + strand, within RR42_RS32685at 2728.489 kb on + strand, within RR42_RS32685at 2728.552 kb on + strand, within RR42_RS32685at 2728.615 kb on + strand, within RR42_RS32685at 2728.616 kb on - strand, within RR42_RS32685at 2728.676 kb on - strandat 2728.753 kb on + strandat 2728.754 kb on - strandat 2728.754 kb on - strandat 2729.045 kb on + strandat 2729.045 kb on + strandat 2729.054 kb on + strandat 2729.055 kb on - strandat 2729.353 kb on + strandat 2729.353 kb on + strandat 2729.354 kb on - strandat 2729.394 kb on - strandat 2729.522 kb on + strandat 2729.522 kb on + strandat 2729.523 kb on - strandat 2729.600 kb on + strandat 2729.601 kb on - strandat 2729.803 kb on + strand, within RR42_RS32695at 2729.963 kb on - strand, within RR42_RS32695at 2729.963 kb on - strand, within RR42_RS32695

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM
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2,728,229 - RR42_RS32685 0.50 +0.9
2,728,261 + RR42_RS32685 0.53 +0.6
2,728,474 + RR42_RS32685 0.75 +0.5
2,728,489 + RR42_RS32685 0.76 -0.0
2,728,552 + RR42_RS32685 0.83 -0.4
2,728,615 + RR42_RS32685 0.89 +0.8
2,728,616 - RR42_RS32685 0.89 +1.0
2,728,676 - -0.4
2,728,753 + -0.1
2,728,754 - +0.4
2,728,754 - -0.2
2,729,045 + -0.1
2,729,045 + +0.9
2,729,054 + -0.1
2,729,055 - -0.7
2,729,353 + -0.1
2,729,353 + +0.1
2,729,354 - -0.5
2,729,394 - +0.2
2,729,522 + -0.4
2,729,522 + -1.3
2,729,523 - +1.3
2,729,600 + -0.1
2,729,601 - +0.1
2,729,803 + RR42_RS32695 0.22 +0.5
2,729,963 - RR42_RS32695 0.31 +0.9
2,729,963 - RR42_RS32695 0.31 -0.1

Or see this region's nucleotide sequence