Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30920

Experiment: R2A with copper (II) chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS30910 and RR42_RS30915 overlap by 13 nucleotidesRR42_RS30915 and RR42_RS30920 overlap by 1 nucleotidesRR42_RS30920 and RR42_RS30925 are separated by 91 nucleotides RR42_RS30910: RR42_RS30910 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 2,316,259 to 2,317,251 _RS30910 RR42_RS30915: RR42_RS30915 - formyltransferase, at 2,317,239 to 2,318,198 _RS30915 RR42_RS30920: RR42_RS30920 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 2,318,198 to 2,319,169 _RS30920 RR42_RS30925: RR42_RS30925 - chitin deacetylase, at 2,319,261 to 2,320,151 _RS30925 Position (kb) 2318 2319 2320Strain fitness (log2 ratio) -1 0 1at 2320.150 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM
remove
2,320,150 - +0.6

Or see this region's nucleotide sequence