Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29935

Experiment: R2A with copper (II) chloride 0.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with copper (II) chloride 0.25 mM
2,082,137	-		RR42_RS29930	0.18	+0.3
2,082,199	+		RR42_RS29930	0.23	-0.3
2,082,200	-		RR42_RS29930	0.23	-0.2
2,082,203	-		RR42_RS29930	0.24	-0.2
2,082,203	-		RR42_RS29930	0.24	-0.1
2,082,209	+		RR42_RS29930	0.24	+0.1
2,082,209	+		RR42_RS29930	0.24	-0.7
2,082,209	+		RR42_RS29930	0.24	-0.1
2,082,210	-		RR42_RS29930	0.24	-0.6
2,082,210	-		RR42_RS29930	0.24	+2.2
2,082,225	+		RR42_RS29930	0.26	-0.2
2,082,226	-		RR42_RS29930	0.26	-0.4
2,082,239	+		RR42_RS29930	0.27	+0.4
2,082,240	-		RR42_RS29930	0.27	-0.8
2,082,240	-		RR42_RS29930	0.27	+0.0
2,082,310	+		RR42_RS29930	0.33	+0.6
2,082,310	+		RR42_RS29930	0.33	-1.1
2,082,311	-		RR42_RS29930	0.33	+0.1
2,082,311	-		RR42_RS29930	0.33	-0.8
2,082,334	-		RR42_RS29930	0.35	-1.7
2,082,391	+		RR42_RS29930	0.40	-0.4
2,082,391	+		RR42_RS29930	0.40	+1.9
2,082,391	+		RR42_RS29930	0.40	+0.6
2,082,391	+		RR42_RS29930	0.40	+0.7
2,082,392	-		RR42_RS29930	0.41	+0.0
2,082,392	-		RR42_RS29930	0.41	-0.2
2,082,392	-		RR42_RS29930	0.41	+1.6
2,082,423	+		RR42_RS29930	0.43	+2.0
2,082,423	+		RR42_RS29930	0.43	-0.5
2,082,424	-		RR42_RS29930	0.43	-0.4
2,082,424	-		RR42_RS29930	0.43	+0.4
2,082,485	-		RR42_RS29930	0.49	-0.4
2,082,492	+		RR42_RS29930	0.49	+1.9
2,082,492	+		RR42_RS29930	0.49	+0.0
2,082,493	-		RR42_RS29930	0.50	+0.0
2,082,493	-		RR42_RS29930	0.50	-1.6
2,082,493	-		RR42_RS29930	0.50	+0.0
2,082,499	-		RR42_RS29930	0.50	+0.2
2,082,558	+		RR42_RS29930	0.55	+0.6
2,082,559	-		RR42_RS29930	0.55	-0.4
2,082,565	+		RR42_RS29930	0.56	+0.9
2,082,565	+		RR42_RS29930	0.56	-1.9
2,082,565	+		RR42_RS29930	0.56	-0.8
2,082,565	+		RR42_RS29930	0.56	+0.9
2,082,603	-		RR42_RS29930	0.59	-1.0
2,082,656	+		RR42_RS29930	0.64	+0.1
2,082,656	+		RR42_RS29930	0.64	-0.2
2,082,656	+		RR42_RS29930	0.64	-0.2
2,082,696	+		RR42_RS29930	0.68	-0.7
2,082,744	+		RR42_RS29930	0.72	-1.3
2,082,744	+		RR42_RS29930	0.72	+0.4
2,082,745	-		RR42_RS29930	0.72	+0.4
2,082,745	-		RR42_RS29930	0.72	+0.5
2,082,745	-		RR42_RS29930	0.72	+1.3
2,082,761	-		RR42_RS29930	0.74	-0.6
2,082,786	+		RR42_RS29930	0.76	-1.0
2,082,787	-		RR42_RS29930	0.76	-1.2
2,082,787	-		RR42_RS29930	0.76	+0.5
2,082,810	+		RR42_RS29930	0.78	-0.1
2,082,811	-		RR42_RS29930	0.78	-0.4
2,082,836	+		RR42_RS29930	0.80	-2.1
2,082,836	+		RR42_RS29930	0.80	-0.5
2,082,837	-		RR42_RS29930	0.80	-0.1
2,082,846	-		RR42_RS29930	0.81	-0.7
2,082,846	-		RR42_RS29930	0.81	+0.1
2,082,878	-		RR42_RS29930	0.84	-0.0
2,082,892	+		RR42_RS29930	0.85	-0.1
2,082,892	+		RR42_RS29930	0.85	-1.0
2,082,892	+		RR42_RS29930	0.85	-0.9
2,082,892	+		RR42_RS29930	0.85	-0.5
2,082,892	+		RR42_RS29930	0.85	-1.0
2,082,893	-		RR42_RS29930	0.85	+0.9
2,082,893	-		RR42_RS29930	0.85	-0.1
2,082,983	+				+1.2
2,082,983	+				+0.3
2,082,984	-				-0.3
2,082,984	-				-1.1
2,082,984	-				-0.4
2,082,984	-				-0.3
2,082,990	-				-1.2
2,082,990	-				-1.0
2,082,996	+				-0.2
2,083,009	-				+0.1
2,083,068	+				+0.8
2,083,122	+				-1.4
2,083,122	+				-0.6
2,083,122	+				-1.6
2,083,122	+				+1.6
2,083,127	-				-0.5
2,083,144	+				+0.7
2,083,216	+		RR42_RS29935	0.13	+0.6
2,083,217	-		RR42_RS29935	0.13	-0.1
2,083,229	-		RR42_RS29935	0.14	+0.4
2,083,240	+		RR42_RS29935	0.15	-0.4
2,083,241	-		RR42_RS29935	0.15	-0.4
2,083,242	+		RR42_RS29935	0.15	+0.0
2,083,242	+		RR42_RS29935	0.15	-1.1
2,083,242	+		RR42_RS29935	0.15	+0.3
2,083,242	+		RR42_RS29935	0.15	+2.2
2,083,243	-		RR42_RS29935	0.15	-0.1
2,083,275	+		RR42_RS29935	0.18	-1.0
2,083,310	+		RR42_RS29935	0.21	+0.3
2,083,358	-		RR42_RS29935	0.25	+1.1
2,083,388	-		RR42_RS29935	0.27	+0.8
2,083,388	-		RR42_RS29935	0.27	+2.3
2,083,390	+		RR42_RS29935	0.27	-0.3
2,083,390	+		RR42_RS29935	0.27	-0.8
2,083,390	+		RR42_RS29935	0.27	+0.3
2,083,394	+		RR42_RS29935	0.28	-0.9
2,083,500	+		RR42_RS29935	0.37	-1.2
2,083,542	+		RR42_RS29935	0.40	-0.2
2,083,543	-		RR42_RS29935	0.40	-0.4
2,083,543	-		RR42_RS29935	0.40	+0.1
2,083,543	-		RR42_RS29935	0.40	+0.4
2,083,555	+		RR42_RS29935	0.41	-0.6
2,083,643	-		RR42_RS29935	0.49	-1.4
2,083,643	-		RR42_RS29935	0.49	-0.3
2,083,643	-		RR42_RS29935	0.49	+0.6
2,083,720	+		RR42_RS29935	0.55	+1.6
2,083,720	+		RR42_RS29935	0.55	-0.3
2,083,720	+		RR42_RS29935	0.55	-0.4
2,083,721	-		RR42_RS29935	0.55	-0.8
2,083,721	-		RR42_RS29935	0.55	+0.3
2,083,721	-		RR42_RS29935	0.55	-0.9
2,083,793	+		RR42_RS29935	0.61	+0.1
2,083,793	+		RR42_RS29935	0.61	+0.1
2,083,794	-		RR42_RS29935	0.62	-1.6
2,083,794	-		RR42_RS29935	0.62	+0.5
2,083,794	-		RR42_RS29935	0.62	+0.3
2,083,794	-		RR42_RS29935	0.62	+0.4
2,083,797	+		RR42_RS29935	0.62	-0.4
2,083,797	+		RR42_RS29935	0.62	+0.0
2,083,797	+		RR42_RS29935	0.62	-0.2
2,083,797	+		RR42_RS29935	0.62	-1.5
2,083,797	+		RR42_RS29935	0.62	-0.2
2,083,797	+		RR42_RS29935	0.62	-0.1
2,083,798	-		RR42_RS29935	0.62	-0.3
2,083,798	-		RR42_RS29935	0.62	+0.2
2,083,798	-		RR42_RS29935	0.62	+0.0
2,083,798	-		RR42_RS29935	0.62	-1.4
2,083,798	-		RR42_RS29935	0.62	-0.1
2,083,866	+		RR42_RS29935	0.68	+0.0
2,083,866	+		RR42_RS29935	0.68	-1.4
2,083,867	-		RR42_RS29935	0.68	+0.3
2,083,867	-		RR42_RS29935	0.68	-1.3
2,083,867	-		RR42_RS29935	0.68	+0.8
2,083,933	+		RR42_RS29935	0.73	+0.6
2,083,933	+		RR42_RS29935	0.73	+0.6
2,083,974	+		RR42_RS29935	0.77	+1.0
2,083,975	-		RR42_RS29935	0.77	-0.1
2,084,021	+		RR42_RS29935	0.81	+0.6
2,084,021	+		RR42_RS29935	0.81	+0.1
2,084,021	+		RR42_RS29935	0.81	+0.4
2,084,021	+		RR42_RS29935	0.81	-0.4
2,084,021	+		RR42_RS29935	0.81	+0.4
2,084,022	-		RR42_RS29935	0.81	-0.4
2,084,022	-		RR42_RS29935	0.81	-0.8
2,084,022	-		RR42_RS29935	0.81	-0.3
2,084,074	+		RR42_RS29935	0.85	+1.6
2,084,075	-		RR42_RS29935	0.85	+0.7
2,084,075	-		RR42_RS29935	0.85	-0.4
2,084,076	+		RR42_RS29935	0.85	+0.3
2,084,076	+		RR42_RS29935	0.85	-0.8
2,084,076	+		RR42_RS29935	0.85	-0.5
2,084,076	+		RR42_RS29935	0.85	-2.0
2,084,077	-		RR42_RS29935	0.85	-0.9
2,084,077	-		RR42_RS29935	0.85	-0.1
2,084,077	-		RR42_RS29935	0.85	-0.1
2,084,077	-		RR42_RS29935	0.85	-0.0
2,084,135	+				+0.4
2,084,201	+				+0.3
2,084,202	-				+0.7
2,084,202	-				-0.3
2,084,269	+				-0.3
2,084,269	+				-0.1
2,084,270	-				-0.9
2,084,273	+				-1.4
2,084,274	-				+1.9
2,084,280	-				-0.7
2,084,370	-		RR42_RS29940	0.12	-0.3
2,084,370	-		RR42_RS29940	0.12	-0.4
2,084,370	-		RR42_RS29940	0.12	+0.0
2,084,379	+		RR42_RS29940	0.14	+0.6
2,084,381	+		RR42_RS29940	0.14	+0.6
2,084,382	-		RR42_RS29940	0.14	+0.1
2,084,382	-		RR42_RS29940	0.14	-0.7
2,084,444	-		RR42_RS29940	0.22	+0.4
2,084,482	+		RR42_RS29940	0.28	-0.6
2,084,483	-		RR42_RS29940	0.28	+0.0
2,084,622	+		RR42_RS29940	0.47	+0.6
2,084,623	-		RR42_RS29940	0.47	+1.1
2,084,623	-		RR42_RS29940	0.47	-0.5
2,084,645	-		RR42_RS29940	0.50	-0.8
2,084,716	+		RR42_RS29940	0.59	+2.2
2,084,755	-		RR42_RS29940	0.65	-0.8
2,084,860	+		RR42_RS29940	0.79	-0.2
2,084,860	+		RR42_RS29940	0.79	+0.0
2,084,861	-		RR42_RS29940	0.79	+0.4
2,084,968	-				-0.1
2,085,024	+				-1.3
2,085,073	+				-0.4