Experiment: R2A with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24925 and RR42_RS24930 are separated by 105 nucleotides RR42_RS24930 and RR42_RS24935 are separated by 170 nucleotides
RR42_RS24925: RR42_RS24925 - LysR family transcriptional regulator, at 929,739 to 930,644
_RS24925
RR42_RS24930: RR42_RS24930 - AraC family transcriptional regulator, at 930,750 to 931,346
_RS24930
RR42_RS24935: RR42_RS24935 - formyl-CoA transferase, at 931,517 to 932,701
_RS24935
Position (kb) 930
931
932 Strain fitness (log2 ratio) -1
0
1
2 at 929.959 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.166 kb on + strand, within RR42_RS24925 at 930.167 kb on - strand, within RR42_RS24925 at 930.177 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.388 kb on + strand, within RR42_RS24925 at 930.389 kb on - strand, within RR42_RS24925 at 930.501 kb on + strand, within RR42_RS24925 at 930.502 kb on - strand, within RR42_RS24925 at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.565 kb on - strand at 930.688 kb on + strand at 930.689 kb on - strand at 930.718 kb on - strand at 931.016 kb on + strand, within RR42_RS24930 at 931.509 kb on + strand at 931.516 kb on + strand at 931.517 kb on - strand at 931.537 kb on + strand at 931.621 kb on + strand at 931.839 kb on - strand, within RR42_RS24935 at 931.964 kb on + strand, within RR42_RS24935 at 931.964 kb on + strand, within RR42_RS24935 at 931.964 kb on + strand, within RR42_RS24935 at 931.964 kb on + strand, within RR42_RS24935 at 931.965 kb on - strand, within RR42_RS24935 at 931.965 kb on - strand, within RR42_RS24935 at 931.965 kb on - strand, within RR42_RS24935 at 931.965 kb on - strand, within RR42_RS24935 at 932.063 kb on + strand, within RR42_RS24935 at 932.204 kb on + strand, within RR42_RS24935 at 932.204 kb on + strand, within RR42_RS24935 at 932.204 kb on + strand, within RR42_RS24935 at 932.204 kb on + strand, within RR42_RS24935 at 932.205 kb on - strand, within RR42_RS24935 at 932.329 kb on + strand, within RR42_RS24935 at 932.330 kb on - strand, within RR42_RS24935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM remove 929,959 - RR42_RS24925 0.24 +0.5 930,146 - RR42_RS24925 0.45 +0.1 930,146 - RR42_RS24925 0.45 +0.4 930,146 - RR42_RS24925 0.45 +0.3 930,166 + RR42_RS24925 0.47 -0.3 930,167 - RR42_RS24925 0.47 -0.1 930,177 + RR42_RS24925 0.48 +0.1 930,264 + RR42_RS24925 0.58 -1.5 930,264 + RR42_RS24925 0.58 -0.5 930,264 + RR42_RS24925 0.58 +0.4 930,388 + RR42_RS24925 0.72 -1.5 930,389 - RR42_RS24925 0.72 +0.7 930,501 + RR42_RS24925 0.84 +1.5 930,502 - RR42_RS24925 0.84 -0.7 930,564 + +0.1 930,564 + -0.2 930,564 + -1.5 930,564 + -0.1 930,565 - -0.7 930,688 + -0.7 930,689 - +1.0 930,718 - -0.2 931,016 + RR42_RS24930 0.45 -0.7 931,509 + -0.6 931,516 + -0.7 931,517 - -0.0 931,537 + -0.7 931,621 + -0.9 931,839 - RR42_RS24935 0.27 +0.9 931,964 + RR42_RS24935 0.38 +1.1 931,964 + RR42_RS24935 0.38 -0.0 931,964 + RR42_RS24935 0.38 +0.7 931,964 + RR42_RS24935 0.38 -0.6 931,965 - RR42_RS24935 0.38 +0.2 931,965 - RR42_RS24935 0.38 +1.9 931,965 - RR42_RS24935 0.38 -0.1 931,965 - RR42_RS24935 0.38 -0.3 932,063 + RR42_RS24935 0.46 +0.3 932,204 + RR42_RS24935 0.58 -0.3 932,204 + RR42_RS24935 0.58 +0.6 932,204 + RR42_RS24935 0.58 +0.3 932,204 + RR42_RS24935 0.58 +0.4 932,205 - RR42_RS24935 0.58 -0.1 932,329 + RR42_RS24935 0.69 +0.3 932,330 - RR42_RS24935 0.69 -0.8
Or see this region's nucleotide sequence